| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3077 |
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| Symbol | |
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| ID | 3368597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3680341 |
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| End bp | 3681816 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637653423 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_236149 |
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| Protein GI | 66046308 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.762548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACCGC AAGGACGCGC CGTGTATCCT CATGCCCTCA AACTGGCTTT GCTGTTCCTG
CTCACCATCG CGTTGGCTCC CTCGTTTGCA GCGCCTGCCA CCGTCAATTT GCCAGGCGAT
CAGGGCGTTG TTCATGACCG CCGGGATCTG CTAAAGCGCC ACGCGGATCT TTTAGATGTT
TATAAAGCCG CCTTTTTCAA CGATGCGCGA TTGTCCGCAG CGCGTCATGC TTACAGGGCA
CAACGCGAAG GCGTGCCTCA GGCGCGTGCA GGCCTGCTGC CGAATCTGAC CGCCGGGGCA
ACGTCAGAAG TAACCCGTCT GGAGCGAGAC GAGCCTTCCC TAAGCCGAGA GCGAAGTGGC
ACAACGTTTC GTGCCAACCT CAGTCAGCCG TTGTTCCGCA TTGATCGCTG GTTTCAATTG
AAGGCTGCGC AATCGAGCCT GGATCAAGCC GGGCTTGAGC TGTCGGCCAA AGAGCAAAAC
TTGCTGCTGA CCGCTGCCCA GGCCTACTTT GAAACACTGC GCCAACTGGA CGCGTTCGCA
GCCGCCCAGG CTGAAGAAGC TGCGCTATTG CGTCAGCGCG ACCAGGCTCA AGGGCGTCTG
GAGGATGGTG CTTCAAGCAT CACGGACGTG TATGACGCCC AGGCGGCCTA TGACAATGCC
CGGGCCAACC GGCAACTGGT GCAGCGAAAA GTAGATGATG CCTATGAAGC GCTGGAGCGC
CTGACCAAGC ACAGCTACAC GTCAATTGCA GGCATAAGAC ACCAGATGCC GGTAGAGGCG
CCCATACCCA ATGATGCCCG TGCCTGGGTC GATATTGCCC TGCGGCAAAA TCTTGAGCTG
CAAGCCAGCG AGCGTGCAGT CAGTGCTGCC GAGCAAACGC TTAATCAGCG TAAAGCCGGG
CATGCCCCCA CTGTTGACGC TGTTGCTTCT TATCGCAAAG GTGATAACGA CAGCTTTGGC
TACAGTAACC CGACTGACTT CGGCAGTAAC GGTTATCGCG ACCAGGTCGC GCAAAGCAGC
ATTGGCATTG AGCTCAATAT CCCTCTTTAC TCGGGCGGAA TGACCAACTC CCAGATCAAG
GAGTCCACCG AGCGTCTGTA TCAGAGCCAG GACGAACAGG AAGACCGCCG CCGCGATGTG
GTGCTCAATA CACGCAATGC GTTTCGCGGC ATCAATACGG GCATAGAGCA GATTGCAGCC
CGACGCCAAA GCATCATTTC CGGTCAGAAA TCCGTGGAAG CCAATCAGGT GGGCGTGGAC
GTTGGCTCTC GCAATATTGC CGATGTACTC AATGCTCAGC GTCAGTTGTA CGCTGCCGTG
CGCGATTATA ACGATGCCCG GTATGACTAC ATTCTCGATA ACCTCAAGCT CAAACAGTCT
GCTGGCATCC TCAGTCCTGA TGACCTGAAA GCACTTGCGT TATATCTCAA GCAAGACTAC
GACCCTGCTC GCGATTTTCT GCCGCCAGGA GTCTGA
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| Protein sequence | MLPQGRAVYP HALKLALLFL LTIALAPSFA APATVNLPGD QGVVHDRRDL LKRHADLLDV
YKAAFFNDAR LSAARHAYRA QREGVPQARA GLLPNLTAGA TSEVTRLERD EPSLSRERSG
TTFRANLSQP LFRIDRWFQL KAAQSSLDQA GLELSAKEQN LLLTAAQAYF ETLRQLDAFA
AAQAEEAALL RQRDQAQGRL EDGASSITDV YDAQAAYDNA RANRQLVQRK VDDAYEALER
LTKHSYTSIA GIRHQMPVEA PIPNDARAWV DIALRQNLEL QASERAVSAA EQTLNQRKAG
HAPTVDAVAS YRKGDNDSFG YSNPTDFGSN GYRDQVAQSS IGIELNIPLY SGGMTNSQIK
ESTERLYQSQ DEQEDRRRDV VLNTRNAFRG INTGIEQIAA RRQSIISGQK SVEANQVGVD
VGSRNIADVL NAQRQLYAAV RDYNDARYDY ILDNLKLKQS AGILSPDDLK ALALYLKQDY
DPARDFLPPG V
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