| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3075 |
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| Symbol | |
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| ID | 3368595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3676622 |
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| End bp | 3678043 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637653421 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_236147 |
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| Protein GI | 66046306 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.775261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAACG CCGAATCGAC CGGACTACTG CAGCGCTACC GCCGCGTGTG GCGCCAATCT
TGGCGTCACC GTCGTGAGAT GGATGCCCCC AAGCGCTTGG CGCATGAAGT TCAGTTTCTG
CCCGCTGCGC TGGAACTCCA GGATAAACCC AGTCATCCCG CGCCGCGTGT TTTCATGTGG
GCGATCATGT TTTTTGCCGC TCTGGCGTTG CTATGGGCAT GCCTGGGCAA GATTGACGTG
GTAGCGACAG CCAGCGGCAA AATCATTCCC AGCGGCAAGA CGAAAACCAT TCAGTCCAGT
GAAACCGCTG TGGTCAAGGC GATTCATGTG CGTGACGGGC AATCGGTCAA GGCCGGTCAG
TTGCTTTTGG AGCTGGACTC CACATCTGCG GATGCTGATG TCGGACGCGT CCGCAGTGAT
TTGCTGGCTG CGCGAATCGA CAGCGCTCGC GCGGCTGCCA TGCTCGACGC AATCAATCAG
CGCAAGCCAC CTCGGGATCT GACCGGCACC ATACTGGATG CCGACCCGAT GCATGTATTG
GCGGCTGAGC GCTGGCTGCA GGGCCAGTAT CAAGAGTACC GCAGTAGCCT TGACCTGGTA
GACGCCGAAA TTCAGCAACG CCAGGCCGAC ATTCAGGCCG CGCGTATTCA AGTCATGAGT
TTGCAGAAAA CTTTGCCTAT CGCCACCAAG CTGGCAAGTG ACTACGAAAA CCTCCTGAAA
AAGCAGTACA TCGCCCGTCA CGCTTACCTG GAAAAGGAAC AAGCGCGCCT GGACCTCGAA
CGCCAACTGA GCGTGCAGCA AGCCAGCGTC CTGCAGTCCA CCGCCGCCCG CCAGGAAGCA
GAGCGCCGCC GCGAAGGCGT GGTCGCCCAG ACCCGCCGCG CCATGCTTGA CCTGTTGCAG
CAAGCCGATC AAAAGATCGC ATCTTTCAAT CAGGACCTGA CCAAGGCTCG CTATCAGGAA
GACCTCACCA CCCTCGAAGC GCCGGTAGAC GGCACCGTCC AGCAACTGGC CGTGCACACC
GTCGGCGGCG TAGTCACCCC CGCACAACCG CTGATGGTAT TAGTCCCCGA CGGCCAGCCC
GTGGAAGTGG AAGCCATGCT GGAAAACAAG GACGTCGGCT TTGTTCGCGC CGGGCAGGCC
GTTACCGTCA AGGTCGAAAC GTTCACCTTC ACCAAGTACG GCACGATAGA AGGCGAAGTC
ATCAGCGTCT CCAACGACGC CATCGAAGAT GAAAAGCGCG GCTTGATCTA CAGCAGCAAG
ATTCGTCTTA ACAGCGATAC GCTGAATGTG AATGGCGTGG ACATCAAGTT GTCGCCGGGC
ATGGCGGTGA CGGCGGAAGT GACGACGAAC AAGCGGCGGG TGATTGAGTA TTTCCTGAGT
CCGTTGCAGC AGCATGCGTC GGAGAGTTTC AGGGAGCGGT AG
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| Protein sequence | MSNAESTGLL QRYRRVWRQS WRHRREMDAP KRLAHEVQFL PAALELQDKP SHPAPRVFMW
AIMFFAALAL LWACLGKIDV VATASGKIIP SGKTKTIQSS ETAVVKAIHV RDGQSVKAGQ
LLLELDSTSA DADVGRVRSD LLAARIDSAR AAAMLDAINQ RKPPRDLTGT ILDADPMHVL
AAERWLQGQY QEYRSSLDLV DAEIQQRQAD IQAARIQVMS LQKTLPIATK LASDYENLLK
KQYIARHAYL EKEQARLDLE RQLSVQQASV LQSTAARQEA ERRREGVVAQ TRRAMLDLLQ
QADQKIASFN QDLTKARYQE DLTTLEAPVD GTVQQLAVHT VGGVVTPAQP LMVLVPDGQP
VEVEAMLENK DVGFVRAGQA VTVKVETFTF TKYGTIEGEV ISVSNDAIED EKRGLIYSSK
IRLNSDTLNV NGVDIKLSPG MAVTAEVTTN KRRVIEYFLS PLQQHASESF RER
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