Gene Psyr_2939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2939 
Symbol 
ID3368459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp3526710 
End bp3527666 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content59% 
IMG OID637653285 
ProductGGDEF 
Protein accessionYP_236011 
Protein GI66046170 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.417006 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCTG TACCTAGCCT GCTGATTGTC GATGATGATA TTTCCGCCAT TCGCGTATTG 
AGCAAAATTC TGAACGGTCT GGGGCAGATT CGTTTTGCCA CGGGCGGTGC CCAGGCCTTG
AAGATGGTCC GGGAAATGCG TCCTGACCTT ATCCTTCTCG ACGCGGAGAT GCCCGGAATG
AGCGGTTTTG AAGTCTGCGA GACGCTCAAG GCTGATCAAT TGCTGGAAGA CGTTCCCGTC
ATCTTCATCA CCAGCCACAC CGAAACCCGT ATCGAGGAAG CCGGACTGGC GCTGGGGGCG
GTGGATTTCA TCGGCAAGCC TATTCAGCCT TTGATCGTCA CGGCGCGAGT AAAGACCCAC
CTGCGCCTGA AAATGGCGAT GGACCAGCTC AACCTGCTGG CCCAGACCGA TGGGCTGACG
GGGCTGGCCA ATCGGCGTTT CCTCGACGAG AGTATCGCGC GCGAATGGCT GCGCATGCGG
CGCAACCAAG GTGCGTTTTC GCTGCTGTTG CTCGACATCG ATTTCTTCAA ACGTTACAAC
GATCACTATG GCCATTTGCA AGGCGATGAG TGCCTGATTG CCATCGCCCA CGCTTTGAAA
AAGTGCGTGC ACAGGTCGAC CGATCTGGTG GCTCGTTATG GGGGCGAGGA GTTTGCCGTG
CTGTTGCCGG ATACCGGGGC AGAGGGCGCC TGTCGTCTGG CGGATGAAAT CGTGCAGCAC
ATTCAAGGCC TCAACAAGCC CCATGAAACC AGTGACTTCG GCCGGGTGAC CGTGTCGGTG
GGGGTAGCAA GTCTGGAGGC TGGTGCGCTG CCCGTCCCGA GCCCGGGCGC TGCAATCGGC
CTTGCGCCTG ACTCGATCGC CATAGCGTTG CTGGCGGAAG CCGACCGGGC CTTGTACCGG
GCCAAGCATG AGGGGCGAAA CTGCAGCCGG TTTGAGCCGA TACAGGTTGC GCCTTGA
 
Protein sequence
MQPVPSLLIV DDDISAIRVL SKILNGLGQI RFATGGAQAL KMVREMRPDL ILLDAEMPGM 
SGFEVCETLK ADQLLEDVPV IFITSHTETR IEEAGLALGA VDFIGKPIQP LIVTARVKTH
LRLKMAMDQL NLLAQTDGLT GLANRRFLDE SIAREWLRMR RNQGAFSLLL LDIDFFKRYN
DHYGHLQGDE CLIAIAHALK KCVHRSTDLV ARYGGEEFAV LLPDTGAEGA CRLADEIVQH
IQGLNKPHET SDFGRVTVSV GVASLEAGAL PVPSPGAAIG LAPDSIAIAL LAEADRALYR
AKHEGRNCSR FEPIQVAP