Gene Psyr_2606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2606 
Symbol 
ID3368123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp3060225 
End bp3061661 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content60% 
IMG OID637652954 
ProductRND efflux system, outer membrane lipoprotein, NodT 
Protein accessionYP_235683 
Protein GI66045842 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0037798 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGATA GGCGCAGAAT GAACAGATCA ATTGGCCCCT GGCTGTTTAC GGCACTGTCC 
TTGAGCGGCT GCTCGTTGAT TCCGGACTAT CAGCGCCCGG CGGCACCGGT TGCCGCGCAC
TACCCACAAT CCTCAGCCTA TGCGCCAGCA CTCTCTGGTC CGCTGGCGGC GGACATGGGC
TGGCGTGACC TGTTCCGCGA CCCGACGCTG CAACAGCTTA TCGAAAGCGC CCTGCTCAAC
AATCGTGACT TGCGCGTTGC AGCGCTCAAC GTCGAGGCCT ATCAAGCGCA ATACCGCATT
CAGCGCGCCG ATCTGTTTCC CGCGATCAGC GCCACAGGCA GCGGTACCCG GCAACGCCAG
CCCGCCAGTA TCACGCAGAC CGGCGGCCCG GTGACCAGCG GTACTTATTC GGCAACGCTG
GGTATCAGCT CTTACGAGCT GGATTTGTTC GGACGCATAC GCAGTCTCAG CGATCAGGCC
TCGCTCACCT ATTTGTCCAG CGAAGAGGCC CGGCGCAGCA CCCTACTAAG CCTGGTGGCG
AGTGTCGCCA CTGCCTACCT GACCTGGCGT GCCGACCAGG AGCTATTGGC CTTGACTCAG
GACACGCTGA TGTCCTACGA AAAGAGCCTG AAGCTGACCA CTCGCAGCCA GCAAGTCGGC
GCTTCTTCGT CACTGGACCT GGCCCAGTCG CGCACATCGG TGGAGAGCGC ACGGGCAAGT
CTGGCGACGT TCCAGCGCCA GGCCGCTCAG GACCTCAATA ACCTGACTTT ACTGGTGGGC
ACGGAGGTTG CGGACAGCGC GCCCAGCCGT CCGTTGTCCT CCGAATGGCT CGCTGAAGTG
CCGGCGGGGC TGCCTTCTGA TCTGCTGCAA CGACGCCCGG ACATTCTTGA AGCCGAATAC
CAGTTGCAGT CGGCCAACGC CAGCATCGGT GCTGCGCGAG CGGCATTCTT CCCGAGCATT
ACCCTGACGG CCAACGCCGG TACATCCAGC ACCGAACTGT CCGGCTTGTT CAAAGGCGGT
TCGGGAGGCT GGGTGTTTTC ACCGCAGATC GATATCCCGA TTTTCAACGC CGGCAGTCTG
CGAGCGAGCC TGGATTATTC GAAAATCCAG AAGGATATAA GCGTTTCTAA GTACGAAAAA
TCGATACAGA CCGCCTTTCA GGAGGTCGCC GATGGTCTGG CAGCGCGTCA GACCTACAAG
CATCAGCTGA AGGCGCAGAG CGATCTTGTA CAGGCCAACC AGGAGTATTA CCGCCTTGCC
GAACGACGTT ACCGCATTGG CGTCGACAGC AGCCTGACAC TCCTCGACGC CCAACGCTCT
TTATTCAGCG CTCAACAAAC CCTGATCACC GACCGACTGT CGCAACTGAC CGCCGAAGTC
AATCTCTACA AGGCGCTGGG CGGCGGTTGG ACAGAGCGTA CATCAACACC TTTGTGA
 
Protein sequence
MDDRRRMNRS IGPWLFTALS LSGCSLIPDY QRPAAPVAAH YPQSSAYAPA LSGPLAADMG 
WRDLFRDPTL QQLIESALLN NRDLRVAALN VEAYQAQYRI QRADLFPAIS ATGSGTRQRQ
PASITQTGGP VTSGTYSATL GISSYELDLF GRIRSLSDQA SLTYLSSEEA RRSTLLSLVA
SVATAYLTWR ADQELLALTQ DTLMSYEKSL KLTTRSQQVG ASSSLDLAQS RTSVESARAS
LATFQRQAAQ DLNNLTLLVG TEVADSAPSR PLSSEWLAEV PAGLPSDLLQ RRPDILEAEY
QLQSANASIG AARAAFFPSI TLTANAGTSS TELSGLFKGG SGGWVFSPQI DIPIFNAGSL
RASLDYSKIQ KDISVSKYEK SIQTAFQEVA DGLAARQTYK HQLKAQSDLV QANQEYYRLA
ERRYRIGVDS SLTLLDAQRS LFSAQQTLIT DRLSQLTAEV NLYKALGGGW TERTSTPL