| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2603 |
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| Symbol | |
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| ID | 3368120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3057159 |
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| End bp | 3058328 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637652951 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235680 |
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| Protein GI | 66045839 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.22725 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.133946 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGGCT TTTTCCGGAA ATTGAATGTC CGCAAAATCC TTTTGAGAAT CGTCCTGATC
GATCTGACGG TTTCGCTGGC AGGCTATGCC TTCTATAAGG GCGCCAGCGG AGAAGAAGAG
ACTGCCTTTC TATCAGCCGC AGCAGAAGTT ACGGACATTG AGTACGCCGT ATCCGCACAG
GGTGTGCTTC AGGGGCGTAA TCAAGTGGAC GTTGGCGCCC AGGTTTCCGG GCAATTGCAG
TCCCTGAAAG TCAAACCAGG TGACCAGGTC AAAAAAAACC AGCTGTTGGC AGAGATCGAT
CCACTGCCCG CCAGAAATGC TCTGCGCCAG GCGGTTGTCA AGATCGAACA ACTCACGGCT
GAGCGGGACG CGACACTGCA CAGGTTGAAA CTTGCCGAGT CGAATGATCG TAGATATCAG
GAATTGGGCG CTACGACGGC GGTTTCCAAA GCGGATCAGG ACAAGGCCCG ATTCGAGCTG
GAGACCCAAC GCGCCAACCT GGTGTCGCTC ACCGCACAAT TACACACGGC CCGCGTGCAG
GAAGAAGCCG CACGCATCAA ACTCGACTAC ACACGAATCT TCGCACCAAT GGATGGTCAG
GTCCTCGCCA TCGTCACTCA GGAGGGCCAG ACAGTCATTG CAGACCAGAC GGCACCGGTC
ATTCTGAAGA TGGCGCAACT CGACACCATG ACCGTGAAGG CGCAGGTTTC CGAAGCCGAC
GTGCTCAAGA TCAAACCCGG TCTTGCGATT TACTTCACTA TCCCGGGCGA TCCTGACACA
CGCTATAACG CCACCCTCAA GGCGATCGAG CCGGGTCCTG TGGACGCTGC AAGCCAGACC
GGAGCAACAG CCGAAAGCGG CAAAGCCGTC TTCTACAACG CTCTTTTCGA TGTCCTCAAC
CTTGAAAACC GCTTCTACAT CAACATGACC GCTAACGTGC GAATTGTGCT GGAGGCGAAG
GAGGGCGTAT TAACGATCCC TGTCGCCGCA CTGGGTGATC GGCGGGACGA CGGCACCTAC
AGTGTAAGGG TGCTGGGTGA AGGTAACGAG GTCAGAACAG CCTACGTAGG GCCGGGTATC
AATAACCAGG TCAGGGTCGA AATACGTTCG GGGCTTAAAG CCGGCGACAG AGTGGTCATC
GGAGAGCGGG GCGGTGTGGA AGGTGTTTAA
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| Protein sequence | MVGFFRKLNV RKILLRIVLI DLTVSLAGYA FYKGASGEEE TAFLSAAAEV TDIEYAVSAQ
GVLQGRNQVD VGAQVSGQLQ SLKVKPGDQV KKNQLLAEID PLPARNALRQ AVVKIEQLTA
ERDATLHRLK LAESNDRRYQ ELGATTAVSK ADQDKARFEL ETQRANLVSL TAQLHTARVQ
EEAARIKLDY TRIFAPMDGQ VLAIVTQEGQ TVIADQTAPV ILKMAQLDTM TVKAQVSEAD
VLKIKPGLAI YFTIPGDPDT RYNATLKAIE PGPVDAASQT GATAESGKAV FYNALFDVLN
LENRFYINMT ANVRIVLEAK EGVLTIPVAA LGDRRDDGTY SVRVLGEGNE VRTAYVGPGI
NNQVRVEIRS GLKAGDRVVI GERGGVEGV
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