| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2486 |
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| Symbol | |
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| ID | 3368003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2888620 |
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| End bp | 2890731 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637652834 |
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| Product | GGDEF |
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| Protein accession | YP_235563 |
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| Protein GI | 66045722 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.140313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGATTG GCAGCTACAT CCCCTCACTC GTCGTCATCT CGATTCTCGT CGCTATTCTT
GCCGCCTATA CGGCCCTCGA TCTGGTTGGC CGCATCGTTT CGGCCAGGGG CCGTGCCGTT
CACCTATGGA TCGCGGGAGG CGCTGTCGCG ATGGGCGTCG GCACCTGGTC GACGCATTTC
ATCGGTATGC TGGCGTTCGT ATTGCCCATC GACCTGGGCT ACGACGTGCC ACTGGTGCTG
CTTTCGCTGT TGATCGCCAT CGGCTTTTCA GGGTTCGCCC TGTGGCTCGC CACTCTGCCG
CGATTGCCGG CACTGCAACT GAGCCTGGGG TCGCTGTTAC TGGGGCTTGG CATCAGCGCC
ACGCATTACA CCGGCATGGC GGCAATGCGT ATGCAGCCGG GCATCCAGTA CACGCCGTGG
CTGTTCGCGC TTTCGTTGGT CACTGCTGTC GTTGCATCCG CAGCAGCATT GCGCGTGGCC
TTCCACCTTC GTCAGCAACG CCCGAGAGTC TACGTGTTGC GCGCCTCGGC GGCGCTGTTG
CTGGGGCTGG CTGTCATCGG CATGCATTAC ACCGGTATGG CCGCCGCGAA TTTTGCCGAT
GGCAGCTTTT GTGGTGCGCT GCCCCAAGGG TTGAGCAGTA ACGGGCTGGA CAGATTCGTG
CTGGTCGCCA GCCTGTCGAT TCTGGGGATT GCGCTGTTCA GCTGTATTCT CGATTCGCAT
CTGGAAACAC GTACCGCCGT GCTGGCCGAT TCTCTGACGC AAGCCAATCT GGAACTGACC
CACCTGGCCC TGCATGACAA CCTGACCGGT TTGCCAAACC GGGCGTTGTT GACCGAACGC
ATCGATCAGG CAATGAAGAG GGCCACCGAG ACGGGTGGCT GCTTTGCGCT GATGTTCATG
GACCTCGATG GCTTCAAACC GGTCAATGAC GCGTTCGGGC ACCACACCGG CGACCTGCTG
TTGCGGCAGG TCGCCTTGCG TCTTCGCAAC AGCCTGCACC GTCGCGACAC GCTGGCCAGA
GTCGGCGGTG ACGAGTTTGT CCTGCTGGTG GAGCTTCAAC ACCCTGAGGA TGCATTGGCC
GTTGCCAGAC GACAGGTCAA CGAAGTCGGC AACCCGTTTA TCATTGGCGA ACATCAGTTG
CAGATTTCCC TCAGCATCGG CATCTGCGTG TATCCGGGCA ATGGCAGCAC CCAGCATGAG
CTTCTGATCA ATGCCGACGC CGCCATGTAC CACACCAAGG CGGCCGGCAA GAACGGCTAC
AGCTTTTTCG ATGTGTCGAT GAACAGTAAC GCCCGCAATC AGTTGCAGAT GTCGCAGGAT
TTGCACAAGG CGATCAAGCA CCGGCAGTTC TGTATCTATT ACCAGCCCAA GTTCGACGCG
ATGACCGGAC TGCCCGTAGG CGCAGAAGCG TTGCTGCGCT GGAATCATCC GAAACAGGGC
GTCCTTGGGC CGGACCTGTT CATTTCCATG GCGGAGAAGA CCGGCCTGAT CATTCAGATC
GGCGAGTGGG TGCTGGACGA AGCCTGTCGG CAAATGCGTG AGTGGTACAC CCAGGGCTAC
TCGCACTGGC GCATTGCAGT CAATCTGTCA GCCTTGCAGT TCTGTCATGC CGGGCTGGTT
ACGGCAGTGG CGGATACACT GGCCCGGCAT CAGTTGCCGG CCAACTGCCT GACCCTGGAA
ATCACCGAGA CCACGGCCAT GCATGATGCG GATGCCAGCC TGGCGGTGTT GCGAAGGCTT
TCGGAAATGG GCGTGGACCT GTCGATCGAT GATTTTGGCA CCGGTTACTC CAGCCTGATG
TACCTGAAAC GACTGCCCGC CAATGAAATC AAGATTGATC GGGGCTTCGT CCGCGACCTG
GAGCATGACA CCGACGACGC CGCCATCGTC TCGGCCATCG TCGCGGTAGG GCAGGCGTTG
AATCTGCGGA TCGTCGCCGA GGGCGTCGAA ACCGCTGTTC AGCAGCGCTT CCTGACTCAC
CTGGGATGTC ACTCGCTGCA AGGCTTCCTG CTGGGTTATC CGTTACCGGC CGAGCAGTTT
CTCGAAGAAA TCCGCGCCGC CGAAGCGAAA GCTGCAGTGG AAGCGTCCGA TACCGGGCAA
GCGGCTTTCT GA
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| Protein sequence | MLIGSYIPSL VVISILVAIL AAYTALDLVG RIVSARGRAV HLWIAGGAVA MGVGTWSTHF
IGMLAFVLPI DLGYDVPLVL LSLLIAIGFS GFALWLATLP RLPALQLSLG SLLLGLGISA
THYTGMAAMR MQPGIQYTPW LFALSLVTAV VASAAALRVA FHLRQQRPRV YVLRASAALL
LGLAVIGMHY TGMAAANFAD GSFCGALPQG LSSNGLDRFV LVASLSILGI ALFSCILDSH
LETRTAVLAD SLTQANLELT HLALHDNLTG LPNRALLTER IDQAMKRATE TGGCFALMFM
DLDGFKPVND AFGHHTGDLL LRQVALRLRN SLHRRDTLAR VGGDEFVLLV ELQHPEDALA
VARRQVNEVG NPFIIGEHQL QISLSIGICV YPGNGSTQHE LLINADAAMY HTKAAGKNGY
SFFDVSMNSN ARNQLQMSQD LHKAIKHRQF CIYYQPKFDA MTGLPVGAEA LLRWNHPKQG
VLGPDLFISM AEKTGLIIQI GEWVLDEACR QMREWYTQGY SHWRIAVNLS ALQFCHAGLV
TAVADTLARH QLPANCLTLE ITETTAMHDA DASLAVLRRL SEMGVDLSID DFGTGYSSLM
YLKRLPANEI KIDRGFVRDL EHDTDDAAIV SAIVAVGQAL NLRIVAEGVE TAVQQRFLTH
LGCHSLQGFL LGYPLPAEQF LEEIRAAEAK AAVEASDTGQ AAF
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