Gene Psyr_2297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2297 
Symbol 
ID3367812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2669287 
End bp2670087 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content60% 
IMG OID637652647 
ProductShort-chain dehydrogenase/reductase SDR 
Protein accessionYP_235378 
Protein GI66045537 
COG category[R] General function prediction only
[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.844738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.70278e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCACATCT CACTCAAGCA ACAAGTTGCA ATCGTTACCG GCGCCAGTTC CGGTCTGGGC 
GCAGGTGCCG CACGCGCGCT GGCAGAGGCC GGTGCCGCCG TGGTGATCAA CTACAACTCC
AAGCCTGAAC CTGCCGAGAA ACTCGCCGAA GAGATTCGTG CGGCCGGGGG CAAGGCGCTG
GCTGTGGGTG CCGACGTTTC GAAGGAAGAA GACGTCGAGC GGCTGTTTGC AAAGACCATC
GAACATTTCG GCGCGCTGGA TATTCTGGTC GCCAATTCCG GCTTGCAAAA GGACGCGTCG
ATCGTCGACA TGTCCCTCGA AGACTGGAAT ACCGTCATCA ACGTCAATCT GACCGGGCAG
TTTCTCTGCG CCCGCGCAGC ATTGCGCCAG TTCATCAAGC AGGGCATGCG CCCTGAAGTG
TCACGGGCCA TGGGCAAGAT CATTCACATG AGCTCGGTGC ACCAGCTGAT TCCATGGGCC
GGGCACGTCA ATTACGCAGC GTCCAAGGGC GGCGTCGACC TGTTGATGCG CAGCATCGCT
CAGGAAGTCG GCGAACTGAA GATTCGCGTC AACAGCGTTG CACCGGGTGC CATCCGCACG
CCGATCAATG CCGATGCACG CAAGGGCGAC GCCGAGAAGG AAATGCTCAA GCTGATCCCT
TATGGTCGTA TCGGCGAGCC GGAAGACGTC GCCAATGCCG TGCTCTGGCT GGCTTCCGAT
GCCTCGGATT ATGTGCACGG CACCACCCTG TTCATCGACG GCGGCATGAC CCTCTATCCG
GAGTTCCGTG GCAATGGCTG A
 
Protein sequence
MHISLKQQVA IVTGASSGLG AGAARALAEA GAAVVINYNS KPEPAEKLAE EIRAAGGKAL 
AVGADVSKEE DVERLFAKTI EHFGALDILV ANSGLQKDAS IVDMSLEDWN TVINVNLTGQ
FLCARAALRQ FIKQGMRPEV SRAMGKIIHM SSVHQLIPWA GHVNYAASKG GVDLLMRSIA
QEVGELKIRV NSVAPGAIRT PINADARKGD AEKEMLKLIP YGRIGEPEDV ANAVLWLASD
ASDYVHGTTL FIDGGMTLYP EFRGNG