Gene Psyr_2162 details

Gene Information

• Locus tag: Psyr_2162
• Symbol: thrS
• ID: 3367676
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. syringae B728a
• Kingdom: Bacteria
• Replicon accession: NC_007005
• Strand: +
• Start bp: 2515735
• End bp: 2517657
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637652511
• Product: threonyl-tRNA synthetase
• Protein accession: YP_235243
• Protein GI: 66045402
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.749908
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAACTA TTACTCTTCC CGACGGCAGT CAACGTTCAT TCGATCAGGC GGTTTCCGTA 
GCCGATGTCG CGCTTTCAAT CGGTGCCGGT CTGGCCAAGG CCACCGTCGC CGGCAAGGTC 
GACGGCAAGC TCGTCGACGC CTGCGACCTG ATCGAAAACG ATGCCAGCCT GCAGATCATC 
ACCCCCAAGG ATCAGGAAGG ACTGGAAATC ATCCGTCACT CCTGCGCGCA CCTGGTAGGG 
CACGCGGTCA AGCAGTTGTA TCCGACTGCA AAAATGGTCA TCGGCCCGGT GATCGACGAC 
GGCTTCTATT ACGATATCGC CTACGAGCGC CCGTTCACGC CTGACGATAT GGCGGCGATC 
GAACAGCGCA TGCAGCAGTT GATCGAAAAA GATTACGACG TCATCAAGAA AGTCACGCCG 
CGCGCTGAAG TGATCGAGGT GTTCACCGCC CGTCACGAAG ATTACAAGCT GCGTCTGGTC 
GAAGACATGC CGAGCGAGCA GGCCATGGGC CTGTATTACC ACGAAGAATA CGTCGACATG 
TGCCGCGGTC CACACGTGCC GAACACTCGC TTCCTGAAGT CATTCAAGTT GACCAAGCTG 
TCCGGTGCCT ACTGGCGTGG CGACGCCAAG AACGAGCAAT TGCAGCGCGT CTACGGCACT 
GCCTGGGCCG ACAAGAAACA ACTGGCAGCC TACATCCAGC GCATCGAAGA AGCCGAAAAA 
CGCGACCATC GCAAGATCGG CAAGCGTCTC GGCCTGTTCC ATACCCAGGA AGAAGCGCCG 
GGCATGGTTT TCTGGCACCC GCAGGGCTGG ACCCTGTATC AGGTGCTTGA GCAGTACATG 
CGTAAAGTGC AGCGTGAGAA TGGCTACCTC GAGATCAAGA CCCCGCAAGT GGTCGATCGC 
TCGCTCTGGG AAAAATCCGG GCACTGGGCC AACTACGCCG ACAACATGTT CACCACCGAG 
TCCGAAAGCC GCGACTACGC GATCAAGCCG ATGAACTGCC CTTGCCACGT GCAGGTGTTC 
AATCAGGGCC TGAAAAGCTA CCGCGAGCTG CCGATGCGTC TGGCCGAGTT CGGTGCCTGT 
CACCGTAACG AGCCGTCGGG TGCCTTGCAC GGCATCATGC GCGTGCGTGG CTTCACCCAG 
GACGATGCGC ACATCTTCTG TACCGAAGAC CAGATGCAGG CCGAGTCCGC CGCGTTCATC 
AAGCTGACGC TGGATGTCTA CGCCGATTTC GGTTTCAAGG ATATCGAACT CAAATTGTCC 
ACTCGCCCTG AAAAGCGTGT AGGCTCCGAC GAGCTTTGGG ACCGTGCCGA ATCGGCGCTG 
GCTTCCGCAC TCGACAGCGC TGGTCTGCCT TACGACCTGC AGCCGGGCGA GGGCGCGTTC 
TACGGTCCGA AAATCGAGTT CTCCCTCAAG GATTGTCTCG GTCGGGTATG GCAGTGCGGC 
ACCTTGCAGC TGGACTTCAA TCTGCCGATC CGCTTGAGTG CCGAGTACGT TTCGGAAGAC 
AACAGTCGCA AGAATCCGGT CATGTTGCAC CGCGCAATCC TTGGGTCTTT CGAGCGTTTC 
ATCGGAATTC TGATCGAGCA TTACGAAGGG GCGTTTCCGG CCTGGCTGGC GCCTACCCAG 
GCAGTGATCA TGAATATCAC TGACAAACAG GCCGATTTTG CCCTCGAAGT GGAAAAAACT 
CTGGCCGAAA GCGGGTTTCG TGCCAAGTCC GACTTGAGAA ATGAAAAGAT CGGCTTTAAA 
ATCCGTGAGC ATACTTTGCT CAAGGTTCCT TATCTCCTCG TGATTGGAGA TCGGGAGGTT 
GAAATGCAAA CTGTCGCTGT GCGTACACGT GAAGGCGCTG ACCTTGGCTC GATGCCGGTC 
GCCCAATTCG CTGAATTCCT CGCACAAGCG GTTTCCCGGC GTGGTCGCCA AGATACGGAG 
TAA 

 

Protein sequence

MPTITLPDGS QRSFDQAVSV ADVALSIGAG LAKATVAGKV DGKLVDACDL IENDASLQII 
TPKDQEGLEI IRHSCAHLVG HAVKQLYPTA KMVIGPVIDD GFYYDIAYER PFTPDDMAAI 
EQRMQQLIEK DYDVIKKVTP RAEVIEVFTA RHEDYKLRLV EDMPSEQAMG LYYHEEYVDM 
CRGPHVPNTR FLKSFKLTKL SGAYWRGDAK NEQLQRVYGT AWADKKQLAA YIQRIEEAEK 
RDHRKIGKRL GLFHTQEEAP GMVFWHPQGW TLYQVLEQYM RKVQRENGYL EIKTPQVVDR 
SLWEKSGHWA NYADNMFTTE SESRDYAIKP MNCPCHVQVF NQGLKSYREL PMRLAEFGAC 
HRNEPSGALH GIMRVRGFTQ DDAHIFCTED QMQAESAAFI KLTLDVYADF GFKDIELKLS 
TRPEKRVGSD ELWDRAESAL ASALDSAGLP YDLQPGEGAF YGPKIEFSLK DCLGRVWQCG 
TLQLDFNLPI RLSAEYVSED NSRKNPVMLH RAILGSFERF IGILIEHYEG AFPAWLAPTQ 
AVIMNITDKQ ADFALEVEKT LAESGFRAKS DLRNEKIGFK IREHTLLKVP YLLVIGDREV 
EMQTVAVRTR EGADLGSMPV AQFAEFLAQA VSRRGRQDTE