Gene Psyr_2108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2108 
SymbolrlmL 
ID3367622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2460168 
End bp2462420 
Gene Length2253 bp 
Protein Length750 aa 
Translation table11 
GC content62% 
IMG OID637652457 
Product23S rRNA m(2)G2445 methyltransferase 
Protein accessionYP_235189 
Protein GI66045348 
COG category[R] General function prediction only
[L] Replication, recombination and repair 
COG ID[COG0116] Predicted N6-adenine-specific DNA methylase
[COG1092] Predicted SAM-dependent methyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.949067 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00266929 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCGGATC GCTACGAACT TTTCCTCACT TGCCCCAAAG GCCTTGAAGG CCTGCTTGCC 
GAGGAAGCCA CTGCGCTGGG TCTGCAAGAG ACCCGTGAAC ACACCTCAGC CATTCGCGGC
TCGGCGGACA TGGAGACCGC TTACCGGCTG TGTCTCTGGT CGCGCCTGGC CAACCGCGTG
TTGCTGGTGC TCAAGCGCTT CCCGATGAAG GATGCCGAAG ACCTTTACCA CGGCGTGCTG
GATGTCGAGT GGCAGGACCA TCTCGAATCC GACGGCACCA TTGCGGTGGA ATTCAGTGGT
CATGGTTCGG GCATCGACAA CACCCATTTC GGTGCACTGA AGGTCAAGGA TGCGATCGTC
GACAAGCTGC GCACCCCGGA TGGCGAGCGT CCGTCGGTCG ACAAGATCAA CCCCGATCTG
CGCGTGCACC TGCGTCTGGA TCGCGGCGAG GCCATTCTGT CCCTCGACCT TTCCGGGCAC
AGCCTGCACC AGCGCGGTTA CCGTCTGCAG CAGGGCGCTG CACCGCTGAA GGAAAACCTC
GCCGCCGCCA TCCTGATCCG CGCTGGCTGG CCGCGTATTG CTGCCGAGGG CGGCGCGCTG
GCTGACCCGA TGTGCGGTGT CGGTACCTTT CTGGTCGAGG CCGGGATGAT CGCCGCCGAC
ATCGCGCCCA ACATCAAGCG TGAACGCTGG GGCTTCTCGG CCTGGCTGGG CCACGTCCCG
GCGCTGTGGC GCAAGCTGCA CGACGAAGCG CTGGCCCGCG CCGAGGCCGG GTTGGCCAAA
ACACCTTCGT GGATTCGCGG TTACGAAGCC GATCCTCGAC TGATCCAGCC TGGGCGCAAT
AATATCGAGC GTGCCGGCCT GAGCGACTGG ATCAAGGTCT ATCAGGGCGA AGTCGCGACC
TTCGAGCCGC GTCCCGATCA GAATCAGAAA GGCCTGGTGA TCTGCAACCC TCCGTACGGC
GAGCGTCTGG GAGATGAAGC CAGTCTGCTG TATCTCTACC AGAACCTTGG CGAGCGCCTG
CGTCAGGCGT GCCTTAACTG GGAAGCTGCG GTGTTCACCG GCGCGCCGGA CCTGGGCAAG
CGCATGGGCA TTCGCAGCCA CAAACAGTAT TCGTTCTGGA ACGGCGCCTT GCCGTGCAAG
CTGCTGCTGA TCAAGGTCAC GCCTGATCAG TTCGTGACCG GCGAGCGACG CACCCCCGAG
CAGCGTCAGA TCGAACGCGA AAACCCTGTC GAGGTTGAAG TCGTTGAGCG CAAACTCAAC
AAGAACGGCA ACCCGATCAA GCCGGAACCG GTGGTGGTCG AGCAGGCGCG CCTGAGCGAA
GGCGGGCAGA TGTTTGCCAA TCGTCTGCAA AAGAACCTCA AGCTGATGGG CAAGTGGGTG
CGTCGCGAAG GGATCGATTG CTACCGCGTG TATGACGCCG ACATGCCTGA ATACTCGCTG
GCGATCGATC TGTATCACGA CTGGGTGCAT GTTCAGGAAT ACGCAGCACC CAAGTCCATT
GATCCGGAAA AGGCGTCAGC GCGGCTGTTC GATGCGCTGG CGGCCATTCC GCAAGCACTG
AACATCGACA AGAACCGCGT GGTGATCAAG CGTCGCGAGC GTCAGAGCGG CACCAAGCAG
TACGAGCGTC AAAGCGCCCA GGGCCAGTTT CTGGAAGTCA GCGAAGGCGG CGTCAAGCTG
CTGGTCAATC TGACCGACTA CCTGGACACC GGGCTGTTTC TCGATCACCG GCCGATGCGC
ATGCGTATTC AGCGCGAGGC GTCCGGCAAG CGCTTCCTGA ACCTGTTTGC CTATACGGCG
ACGGCCAGTG TGCATGCTGC CAAGGGCGGT GCGCGCAGCA CCACCAGCGT CGACCTGTCG
CGGACCTATC TGGACTGGGC GCGTCGTAAC CTGTCGCTGA ACGGTTTCTC CGACAAGAAT
CGTCTGGAGC AGGGCGACGT GATGGCCTGG CTGCAGGCCA ACCGCGACGA GTACGACCTG
ATCTTCATCG ACCCGCCGAC GTTCTCCAAC TCCAAGCGCA TGGAAGGCAT TTTTGATGTC
CAGCGTGATC AGGTCGAGCT GATCGATCTG GCCATGGCGC GTCTGGCGCC GGGTGGCGTG
TTGTACTTCT CCAACAACTT CCGCAAGTTT GTGCTCGATG AAAACCTGAG TCAGCGTTAT
GCGGTCGAGG ACATTACCGC GCACACCATC GACCAGGACT TTGCCCGTAA CGGCAAGATC
CACCGCGCCT GGAAAATCAT GGCGCGTAGC TGA
 
Protein sequence
MSDRYELFLT CPKGLEGLLA EEATALGLQE TREHTSAIRG SADMETAYRL CLWSRLANRV 
LLVLKRFPMK DAEDLYHGVL DVEWQDHLES DGTIAVEFSG HGSGIDNTHF GALKVKDAIV
DKLRTPDGER PSVDKINPDL RVHLRLDRGE AILSLDLSGH SLHQRGYRLQ QGAAPLKENL
AAAILIRAGW PRIAAEGGAL ADPMCGVGTF LVEAGMIAAD IAPNIKRERW GFSAWLGHVP
ALWRKLHDEA LARAEAGLAK TPSWIRGYEA DPRLIQPGRN NIERAGLSDW IKVYQGEVAT
FEPRPDQNQK GLVICNPPYG ERLGDEASLL YLYQNLGERL RQACLNWEAA VFTGAPDLGK
RMGIRSHKQY SFWNGALPCK LLLIKVTPDQ FVTGERRTPE QRQIERENPV EVEVVERKLN
KNGNPIKPEP VVVEQARLSE GGQMFANRLQ KNLKLMGKWV RREGIDCYRV YDADMPEYSL
AIDLYHDWVH VQEYAAPKSI DPEKASARLF DALAAIPQAL NIDKNRVVIK RRERQSGTKQ
YERQSAQGQF LEVSEGGVKL LVNLTDYLDT GLFLDHRPMR MRIQREASGK RFLNLFAYTA
TASVHAAKGG ARSTTSVDLS RTYLDWARRN LSLNGFSDKN RLEQGDVMAW LQANRDEYDL
IFIDPPTFSN SKRMEGIFDV QRDQVELIDL AMARLAPGGV LYFSNNFRKF VLDENLSQRY
AVEDITAHTI DQDFARNGKI HRAWKIMARS