Gene Psyr_1988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1988 
Symbol 
ID3367502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2308408 
End bp2309043 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content63% 
IMG OID637652337 
Product2-dehydro-3-deoxy-6-phosphogalactonate aldolase 
Protein accessionYP_235069 
Protein GI66045228 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0800] 2-keto-3-deoxy-6-phosphogluconate aldolase 
TIGRFAM ID[TIGR01182] Entner-Doudoroff aldolase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0198953 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAAGC AAGCATTGAA AGAAAATGGT CTGGTCGCGA TTCTGCGCGG CTTGCGTCCC 
GAAGAAGCGC CTGCCATGGG CGATGCGCTG TACGAAGCGG GTTTTCGGGT CATCGAAGTG
CCGCTCAACT CTCCGCAACC GTTCGACAGC ATCCGCCTGT TGCGACAGCA GTTGCCTGCC
GATTGCCTGA TCGGTGCTGG CACTGTGCTC ACCCCTGAGC AGGTGACTCA GGTCAAGGAC
GCCGGCGGGC AAGTGATCGT CATGCCGCAC AGCGACGCCA AGGTGCTGCG TGCGGCCAAG
GCGGCCGGGC TATTCCTGTC GCCAGGCGTC GCGACGCCGA CCGAAGCCTT TGCGGCACTG
GCCGAAGGCG CCGATGTGCT CAAGCTGTTT CCTGCCGAGC AGATGTCGCC GGCGGTGGTC
AAGGCGTGGC TGGCGGTCTT GCCCAAGGGC ACGATTCTGC TGCCGGTCGG TGGTATCTCG
CCGGACAACA TGAAGGTATT TCTCGACGCC GGTGTGAAGG GGTTTGGTCT GGGCTCCGGG
CTGTTCAAAC CTGGCATGAG CGTCGCAGAC GTCACCGAGC GTGCCCAGGC CTATGTGGCG
GCCTGGAAGC AGCACAGCGC AGCGCTTGCA GACTGA
 
Protein sequence
MLKQALKENG LVAILRGLRP EEAPAMGDAL YEAGFRVIEV PLNSPQPFDS IRLLRQQLPA 
DCLIGAGTVL TPEQVTQVKD AGGQVIVMPH SDAKVLRAAK AAGLFLSPGV ATPTEAFAAL
AEGADVLKLF PAEQMSPAVV KAWLAVLPKG TILLPVGGIS PDNMKVFLDA GVKGFGLGSG
LFKPGMSVAD VTERAQAYVA AWKQHSAALA D