Gene Psyr_1985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1985 
Symbol 
ID3367499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2304956 
End bp2306038 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content61% 
IMG OID637652334 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_235066 
Protein GI66045225 
COG category[E] Amino acid transport and metabolism
[C] Energy production and conversion 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.2378 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00707192 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCAAGC AGATTCTGAT TCTCCCAGGT GACGGTATTG GTCCGGAAAT CATGACCGAA 
GCGGTCAAGG TGCTGGAGCT GGCCAACGAA AAGTATCAAC TGGGCTTTGA ATTGACCCAC
GACGTGATCG GCGGCGCGGC CATCGACAAG CACGGCGTGC CGCTGGCCGA TGAAACCCTG
GAGCGTGCCC GTGCGGCCGA CGCCGTGCTG CTCGGCGCAG TCGGCGGACC GAAATGGGAC
ACCATCGAGC GTGACATCCG TCCTGAGCGC GGTCTGCTGA AAATCCGTTC GCAACTGGGC
CTGTTCGGCA ACCTGCGTCC GGCGATCCTT TATCCGCAAC TGGCCGACGC GTCGAGCCTG
AAGCCGGAAA TCGTCGCCGG CCTGGATATC ATGATCGTTC GCGAGCTGAC CGGTGGCATC
TATTTCGGCG CGCCACGCGG CACGCGGGTG CTGGATAATG GCGAGCGTCA GGCTTACGAC
ACGCTGCCTT ACAGCGAAAG CGAGATCCGC CGCATTGCCA AGGTCGGTTT CGACATGGCC
ATGGTGCGTG GCAAGAAGCT CTGCTCGGTG GACAAGGCCA ACGTGCTGGC GTCCAGCCAG
CTGTGGCGCG AAATCGTCGA GCAGGTCGCC AGGGATTACC CTGAAGTCGA ACTGAGCCAC
ATGTACGTCG ACAACGCTGC CATGCAACTG GTGCGTGCAC CCAAGCAGTT CGATGTGATC
GTGACCGACA ACCTGTTCGG CGACATCCTC TCCGATCAGG CATCGATGCT CACCGGCTCC
ATCGGCATGC TGCCGTCGGC CTCGCTGGAC ACGGCCAACA AGGGCATGTA CGAGCCATGT
CACGGTTCGG CGCCGGACAT CGCCGGCAAA GGCATCGCCA ACCCGTTGGC GACCATTCTC
TCGGTGTCGA TGATGCTGCG TTACAGCTTC AATCTGACCG ATGCGGCCGA TGCCATCGAA
AAGGCTGTCA GCCTGGTTCT GGATCAGGGT ATCCGCACCG GCGACATCTG GTCGGAAGGC
AAAGTCAAAG TCGGTACGCA GGAAATGGGC GATGCGGTAG TCGCCGCGCT GCGGAATCTG
TAA
 
Protein sequence
MSKQILILPG DGIGPEIMTE AVKVLELANE KYQLGFELTH DVIGGAAIDK HGVPLADETL 
ERARAADAVL LGAVGGPKWD TIERDIRPER GLLKIRSQLG LFGNLRPAIL YPQLADASSL
KPEIVAGLDI MIVRELTGGI YFGAPRGTRV LDNGERQAYD TLPYSESEIR RIAKVGFDMA
MVRGKKLCSV DKANVLASSQ LWREIVEQVA RDYPEVELSH MYVDNAAMQL VRAPKQFDVI
VTDNLFGDIL SDQASMLTGS IGMLPSASLD TANKGMYEPC HGSAPDIAGK GIANPLATIL
SVSMMLRYSF NLTDAADAIE KAVSLVLDQG IRTGDIWSEG KVKVGTQEMG DAVVAALRNL