Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1904 |
Symbol | |
ID | 3367414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 2179308 |
End bp | 2180558 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637652250 |
Product | hypothetical protein |
Protein accession | YP_234986 |
Protein GI | 66045145 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.745747 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00175073 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCAGAC CTCTTTTTGT ATTTATCGGC ACGCGCTACA CCCGTGCGAA GCGACGCAAT CATTTTGTTT CCTTCATCTC CCTGACCTCC ATGATCGGCC TCGCCCTGGG CGTTGTGGTC ATGATAGTCG TGTTATCGGT GATGAACGGT TTCGATCACG AAATGCGTAC CCGCGTGCTC GGCATGGTGC CGCACGCGAC CATCGAATCG GCTGACCCGA TCACCGACTG GCGCGGTCTG GCCGCGAAGG TTCAGGAAAA CCCGCAGGTG CTGGCCGTTG CGCCGTTCAC CCAGATGCAG GGCTTGCTGA CCCACGACGG CAAGGTCCAG AAAGTGCTGC TCAACGGTAT CGACCCGCTT GAAGAGCGCA AGGTCTCGAT CATTGACCAC TTCATCAAGC AGGGCCAGCT CGACAGTCTG TCGCCCGGCA GCTTCGGCAT CATGATCGGC GACAAGGCCG CGGCCAAGCT GGGCGTCGGC ATCGGCGACA AGCTGACCTT CGTTGCGCCT GAAGTGACGG TGACGCCAGC CGGGATGTTC CCGCGCATGA AGCGCTTCGA GGTGACCGGC ATCTTTCACG TCGGCGCCGG CGAAATCGAC GGCTTCCTGG GGCTGACCAA CCTTGATGAC CTGGGCCGTC TGCACCGCTG GAAGCCCAAT CAGGTGCAGG GCCTGCGTCT CAAGTTCGAC GACCTGTTCG CCGCGCCACG CACTTCGTGG GAAATCGCGC AGAAGCTGGG CGAAAACAAC TTCTACTCGC GTGACTGGAC GCGCACCCAC GGCAACCTGT ATCAGGCCAT CCGCATGGAA AAAGCCATGA TCGGTCTGTT GCTGCTGCTG ATCGTGGCGG TGGCGGCCTT CAACATCATT TCCACGCTGG TGATGGTGGT CAATGACAAG AAGGGCGACA TCGCGATTCT GCGTACCCTG GGTGCTACGC CGCGACAGAT CATGGCGATA TTCATGGTCC AGGGCACGGT GATCGGCGTG GTTGGCACGC TGATCGGCGC GGCACTGGGG ATTCTGGCGG CGCTCAATGT CAGTGCTGCC ATTGCTGCAC TCGAAGGGCT GATCGGCCAC AAGTTTCTCA ACGCCGACGT CTACTTCATT GATTACCTGC CTTCGCAACT GATGGCCCAG GACGTGTTCC AGGTCTGTGG TGCAGCGTTG GTCCTGAGTT TCCTCGCCAC CCTGTATCCC GCCTGGCGTG CTGCGCGCAC CCAGCCGGCG GAGGCGTTAC GTTATGAGTG A
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Protein sequence | MFRPLFVFIG TRYTRAKRRN HFVSFISLTS MIGLALGVVV MIVVLSVMNG FDHEMRTRVL GMVPHATIES ADPITDWRGL AAKVQENPQV LAVAPFTQMQ GLLTHDGKVQ KVLLNGIDPL EERKVSIIDH FIKQGQLDSL SPGSFGIMIG DKAAAKLGVG IGDKLTFVAP EVTVTPAGMF PRMKRFEVTG IFHVGAGEID GFLGLTNLDD LGRLHRWKPN QVQGLRLKFD DLFAAPRTSW EIAQKLGENN FYSRDWTRTH GNLYQAIRME KAMIGLLLLL IVAVAAFNII STLVMVVNDK KGDIAILRTL GATPRQIMAI FMVQGTVIGV VGTLIGAALG ILAALNVSAA IAALEGLIGH KFLNADVYFI DYLPSQLMAQ DVFQVCGAAL VLSFLATLYP AWRAARTQPA EALRYE
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