Gene Psyr_1812 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1812 
Symbol 
ID3367320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2085204 
End bp2086538 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content61% 
IMG OID637652160 
Productguanine deaminase 
Protein accessionYP_234897 
Protein GI66045056 
COG category[R] General function prediction only
[F] Nucleotide transport and metabolism 
COG ID[COG0402] Cytosine deaminase and related metal-dependent hydrolases 
TIGRFAM ID[TIGR02967] guanine deaminase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00974317 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCACA ACGAGAGTGC CATGAGTTCA GTTTCCCGCC GTAAAGCCTA CCGCGCCGCC 
ATCGTTCACA GCCTAGCCGA CCCGGCCGAA GTGGCGCTGG AGGCATCCTG TGAATACTTT
GCCGACGGCT TGCTGCTGGT CGAGGACGGC AAGATCGTTT CGGTGGGTCA CGCTGCCGAT
CTGCTGGGGC GGCTCGACGA CGATGTCGAG TTGATCGAGT ACACGGACGC ACTGATAACA
CCGGGGTTCA TCGACACCCA TATTCACTTG CCGCAAACCG GCATGATCGG CTCCTACGGC
GAGCAATTGC TGGACTGGCT CAACACCTAC ACCTTCCCCT GCGAAAGTCA GTTCGCCGAC
CCCGCGCATT CGGCGCAGGT GGCCGACATC TTCATCAAGG AGCTGCTGCG CAACGGCACC
ACCACGGCGC TGGTGTTCGG CAGCGTGCAC AAGGAATCGG TCGAGGCGTT TTTCAGCGCG
GCCCAGGCAC TTGATCTGCG CATGATCGCC GGCAAGGTGA TGATGGACCG CAATGCGCCG
GATTATCTGG TCGATACGCC AGAATCCGGG TATGCCGACA GCAAGGCACT GATCGAGCGC
TGGCATGGCA AAGGTCGTTT GAGTTACGCA GTGACGCCGC GATTCGCGCC GACCAGCAGC
CCGGAGCAAT TGAGCCTGGC CGGCCAGTTG CTCACCGAGT ATCCCGGCCT GTACCTGCAG
ACCCACATCA GCGAGAACCT TCAGGAGATC GAGTGGGTCA AGGCGCTGTT CCCGGAGCGC
AAGCATTACC TGGACGTCTA CGATCACTTC AACCTGCTAG GCGAGCGCTC GGTGTTCGCC
CATGGCGTTC ACCTGTGCGA CGAACAATGC GCCCGACTGG CGCAGGCCGG TTCGGCGATT
GCCTTCTGCC CGACCTCCAA CCTGTTTTTG GGCAGCGGCC TGTTCAACCT GCCGATGGCC
GAGAAGCACA AGGTGAATGT CGGTCTGGGC ACCGACGTGG GCGGCGGCAC CAGCTTTTCG
ATTCTGCAGA CCCTGAACGA GGCCTACAAG GTCATGCAGA TGCAGGGCGC ACGGCTCAAT
CCGTTCAAGT CACTGTACCT GGCAACGCTG GGCGGCGCGC GGGCGCTGCG TCTGGAAGAC
AAGGTCGGCA GCCTGAAGCC CGGCAACGAG GCCGACTTCC TGGTGCTCGA CTACAACGCC
ACCCCACTGC TGTCGTATCG CTTGAAGCAG GCGAAGACTA TCGAAGAGAT TCTGTTCGTG
CTGATGACCA TCGGTGACGA CCGGACGGTG AAGCAGACCT GGTCGGGTGG GCGATTGGTG
CATGACAGAG GCTAG
 
Protein sequence
MSHNESAMSS VSRRKAYRAA IVHSLADPAE VALEASCEYF ADGLLLVEDG KIVSVGHAAD 
LLGRLDDDVE LIEYTDALIT PGFIDTHIHL PQTGMIGSYG EQLLDWLNTY TFPCESQFAD
PAHSAQVADI FIKELLRNGT TTALVFGSVH KESVEAFFSA AQALDLRMIA GKVMMDRNAP
DYLVDTPESG YADSKALIER WHGKGRLSYA VTPRFAPTSS PEQLSLAGQL LTEYPGLYLQ
THISENLQEI EWVKALFPER KHYLDVYDHF NLLGERSVFA HGVHLCDEQC ARLAQAGSAI
AFCPTSNLFL GSGLFNLPMA EKHKVNVGLG TDVGGGTSFS ILQTLNEAYK VMQMQGARLN
PFKSLYLATL GGARALRLED KVGSLKPGNE ADFLVLDYNA TPLLSYRLKQ AKTIEEILFV
LMTIGDDRTV KQTWSGGRLV HDRG