| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1598 |
|---|
| Symbol | |
|---|
| ID | 3367100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1795744 |
|---|
| End bp | 1797516 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637651941 |
|---|
| Product | GGDEF:CBS:EAL |
|---|
| Protein accession | YP_234684 |
|---|
| Protein GI | 66044843 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.29213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0431902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATAA CAGAGCAGCT GAGCGCACTG AGTTCCATTC TGGCTCGTGG TGATTTGCAC
AGTTTGTTCC AACCCATCGT CTCGCTGTCG GAACACCGGA TCCTGGGCTA TGAAGCCTTG
ACCCGCGGCC CGTCCAACAG CGCCCTGCAC TCGCCCCTGA ACCTGTTCGC CATCGCCCGC
CAGGCCGGTC GTCTGAGCGA GCTGGAGTTG AGTTGTCGGG ACAGCGCCTG CCGACGTTTC
AGCCAGCAGA AGTTGCCGGG CAAGCTGTTT CTCAACGTCT CCCCCGAATC GCTGCTCGAA
ACCTCGCATC CACCGGGGCG GACTCTGGAG ATGCTGCGTC GCTACCACAT CGCGCCCAAG
GACGTGGTCA TCGAGTTGAC CGAGCAGATG CCCACCGACG ATTTCGACCT GCTGTACAAA
GCGTTGCACC ACTACCGCGA CATGGGCTTT TCCATCGCGC TGGACGATCT TGGCGCCGGT
TATTCGAGCT TGCGACTCTG GTCGGAGCTG CGCCCGGACT ACGTGAAAAT CGATCGGCAC
TTCATCGACG GCATTCACCA GGATGCGGTG AAGCGCGAAT TCGTCGGCTC CATGCTGCAG
ATGGCCAAGG CCTCCAGAGC GACGGTCATT GCCGAAGGCA TTGAATTGCC CGAAGAGCTG
GCGACGCTGA AAGACATGGG TGTAAACCTG GTTCAAGGCT ATCTGCTGGC CCGACCTCAG
GAGCGCCCGC CGCGCAACAC CCGCGCCATG CCGCCCAGGA CAGAAACCGC AGTAGCGCCG
CTCAACGAAG AAGCGGCCGA CCTGTCTGCC CTGCTCAATC CGCAGCCATC GGTCAGCCAG
TCGACACCCA CGGCTGAAGT GCTGGAAGCA TTTCGCAGGC AGGCGAACCT CAATTCTCTG
GCGGTGCTGG ATGACGACGC CCGACCGTGC GGCATCGTCC ACCGGCATTC GTTGTCCGAG
GCCCTGCTCA AGCCCTTCGG CACCGAGCTG TTTGCCCGCA AACCGATCAG CCGTCTGATG
AGCAGTGACT TTCTCGCCGC GGAGGTCAGC CAGTCGCTGC AACAGGTCAG CCGGCTGTTG
ACCAGCCGTG CCCGGCAGCG CATCGAGGAG GATTTCATCA TCACCTCGAA CGGTGCCTAT
CTGGGCCTCG GACGAGTGAT CGACGTGCTC AAGCTGATTA CCGAAATGAA GATCCAGCAG
GCACGTTACG CCAACCCGCT GACCCTGCTG CCCGGCAACG TTCCGATTCA GCAATGCCTG
ACTCGACTGC TGCAGCAAGG CCGTGCGTCG ATGATCTGCT ACGTGGACAT CGACAGCTTC
AAGCCCTTCA ACGACATCTA CGGTTATGCG CGTGGCGACG AGGTGCTGCT GTGTCTGGCG
CAATGCCTGA ACGACCGCAT CGATCCGGCC AGGGACTTTG TCGGGCACAT CGGCGGGGAT
GATTTTCTGA TGGTGCTGGG CTTTGATGAC TGGGAACGAC GCCTGAAAAC CCTGCTGGAT
GATTTTCAGA ATCAATGCCG GCGTTTCTAC CGCGCAGAAC ACCTGGAAGC CGGTTGTTTC
ATCGCCCTCA ACCGTCAGGG CCAACGCCAG GAATTCCCCC TGCTGTCACT GTCGATTGGC
GTGGTGCACT TGCATGAAGC AAGCTGCACG CTGGTCGATG CCAGCCAATT GGCCGACCTC
GCTTCACAGG CCAAGCACTT CGCCAAGGAT GTCGCCGGCG CCAGCATTCA CGTCATCGAT
TCGACGCGAC TGGATTTGTT GATGCAGGCG TGA
|
|---|
| Protein sequence | MTITEQLSAL SSILARGDLH SLFQPIVSLS EHRILGYEAL TRGPSNSALH SPLNLFAIAR
QAGRLSELEL SCRDSACRRF SQQKLPGKLF LNVSPESLLE TSHPPGRTLE MLRRYHIAPK
DVVIELTEQM PTDDFDLLYK ALHHYRDMGF SIALDDLGAG YSSLRLWSEL RPDYVKIDRH
FIDGIHQDAV KREFVGSMLQ MAKASRATVI AEGIELPEEL ATLKDMGVNL VQGYLLARPQ
ERPPRNTRAM PPRTETAVAP LNEEAADLSA LLNPQPSVSQ STPTAEVLEA FRRQANLNSL
AVLDDDARPC GIVHRHSLSE ALLKPFGTEL FARKPISRLM SSDFLAAEVS QSLQQVSRLL
TSRARQRIEE DFIITSNGAY LGLGRVIDVL KLITEMKIQQ ARYANPLTLL PGNVPIQQCL
TRLLQQGRAS MICYVDIDSF KPFNDIYGYA RGDEVLLCLA QCLNDRIDPA RDFVGHIGGD
DFLMVLGFDD WERRLKTLLD DFQNQCRRFY RAEHLEAGCF IALNRQGQRQ EFPLLSLSIG
VVHLHEASCT LVDASQLADL ASQAKHFAKD VAGASIHVID STRLDLLMQA
|
|---|
| |