Gene Psyr_1410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1410 
SymbolruvB 
ID3366907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1596169 
End bp1597230 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content61% 
IMG OID637651751 
ProductHolliday junction DNA helicase RuvB 
Protein accessionYP_234499 
Protein GI66044658 
COG category[L] Replication, recombination and repair 
COG ID[COG2255] Holliday junction resolvasome, helicase subunit 
TIGRFAM ID[TIGR00635] Holliday junction DNA helicase, RuvB subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.585511 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATAGACG CCGACCGTCT GATAACTGCC ACTGGTGGCC GTGATCGTGA TGAACAGATG 
GACCGCGCGA TTCGGCCACT GAGCCTTGCG GATTACATCG GCCAGCCGAC CGTACGCGAG
CAGATGGAGT TGTTCATCCA GGCTGCCCGT GGTCGCAGCG AAGCGCTGGA TCACACGCTG
ATCTTCGGTC CGCCCGGTCT GGGCAAGACC ACGCTCGCCA ACATCATCGC TCAGGAAATG
GGCGTGTCGA TCAAGAGTAC GTCCGGCCCG GTCCTCGAGC GGCCCGGCGA TCTGGCAGCG
ATCCTGACCA ACCTTGAACC CAATGACGTG CTGTTCATCG ACGAGATCCA TCGTCTGTCG
CCGATCGTCG AGGAAGTGCT GTACCCGGCA ATGGAAGACT TCCAGCTCGA CATCATGATC
GGTGAAGGCC CGGCAGCGCG CTCGATCAAG CTTGATCTGC CGCCGTTCAC GCTGGTCGGT
GCGACCACTC GAGCCGGCAT GCTGACCAAT CCGCTGCGCG ACCGCTTCGG CATCGTGCAG
CGACTCGAGT TTTACAACAT CGCCGATCTT TCCACGATCG TGTCGCGCTC GGCAGGCATT
CTGGGGTTGG TCATCGAGCC GCAAGGCGCT TTCGAGATCG CCAGGCGCGC CCGTGGCACG
CCGCGTATCG CCAACCGCCT GTTGCGTCGG GTGCGGGATT TTGCCGAAGT TCGTGGCAAC
GGGCAGATCA CCCGGCAGAC AGCCGACAAG GCCCTAAACC TGCTGGACGT CGACGAGCAC
GGCTTCGATC ATCAGGACCG GCGTTTGCTG CTGACCATGA TCGAGAAGTT CGACGGTGGT
CCGGTGGGCG TGGACAGCCT GGCGGCGGCC ATCAGCGAAG AGCGTCATAC GATCGAAGAC
GTACTCGAGC CCTATTTGAT CCAGCAAGGC TATATCATGC GCACACCTCG GGGGCGTGTG
GTGACCCGGC ATGCGTATCT GCATTTCGGC CTGAATATCC CGTCGAGGAT GGGCGAGATA
CCGGTACCGG ACGATTTCGG CGACGAGCCC GTGGATTTAT AG
 
Protein sequence
MIDADRLITA TGGRDRDEQM DRAIRPLSLA DYIGQPTVRE QMELFIQAAR GRSEALDHTL 
IFGPPGLGKT TLANIIAQEM GVSIKSTSGP VLERPGDLAA ILTNLEPNDV LFIDEIHRLS
PIVEEVLYPA MEDFQLDIMI GEGPAARSIK LDLPPFTLVG ATTRAGMLTN PLRDRFGIVQ
RLEFYNIADL STIVSRSAGI LGLVIEPQGA FEIARRARGT PRIANRLLRR VRDFAEVRGN
GQITRQTADK ALNLLDVDEH GFDHQDRRLL LTMIEKFDGG PVGVDSLAAA ISEERHTIED
VLEPYLIQQG YIMRTPRGRV VTRHAYLHFG LNIPSRMGEI PVPDDFGDEP VDL