Gene Psyr_1400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1400 
Symbol 
ID3366897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1586621 
End bp1587964 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content56% 
IMG OID637651741 
Productouter membrane porin 
Protein accessionYP_234489 
Protein GI66044648 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.248292 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGTGA TGAAGTGGAG CGCAATCGCA CTGGCCGTTA CGGCAGCCAG CGCCCAAATG 
GCAACAGCCG CACCTTTCGT CAGCGATCAG GCTGATGCCA AGGGCTTTGT GGAAGGCAGC
ACGCTTGACC TGAAGTTGCG CAACTATTAT TTCAACCGTG ACAACAAAAA CGGCAATAGT
GATTTGAGAG ACTGGACCCA AGGTATCTGG GCCAACTTCA GCTCCGGCTA CACCCAAGGC
ACTATTGGTG TCGGCGTGGA AGCATTCGGC TACGGGGGCC TCAGGCTTTG GGGTCTCGAC
AAATACTCAG GCTCCGGAAA TCTGGTCACT GATTCCAATG GTGATAACGA AGCCACGCAG
GGCAAGCTCG GCGGCGCTGT AAAATTTCGT ATATCGAAGA CTGAGTTGAA AGTCGGTGAC
ATGCAGCCCA CAAGCCCAGT GTTTGGGGTT GGCGGTTCGC GCCTGCTACC TCAAACAGCT
AGCGGTCTGA GTCTGCAAAG TAGCGAGATT GCAGGCCTTG ATCTTGAAGC GGGGCACTTC
TACTCAGGCA CCAGCCAGGA CGATACCAGT CATAATGGCA GCATCTGGGC AACTTATGCT
GGCGTCCCAG CCAACAGTGC AGATTTCGCT GGCGGCAAAT ACGCAATTAC TGACGGCCTT
GGCGTTGCAT TCTATGCCGC CAAGCTGGAA GACATCTGGG ATCAGTACTA CGGCAACGTG
AACTATGCAC TGCCCCTAGG CAATGATCAG TCGCTGGCAT TCGATGCGAA CATTTATCGC
ACCGTTGACG AAGGCAGCGC CAAAGCCGGC TCGATCAGCA ACACCACGTT CTCCGGGTCC
GCAGCGTATT CGTTCCTTGC TGCCCATACC GTGACCCTGG CGTTCCAGAA GGTCAACGGT
GACACCCCGT TCGACTACAT CGGGATTGGT GACAATAATC GTGGTGGCGA CTCGATCTTC
CTGAACAACT CGGTCCAGTA CTCCGACTTC AATGGTCCGG GTGAGAAATC CTGGCAGGTT
CGCTATGACC TGAACATGGA GCCTTATGGC GTTCCTGGTC TGAGCTTCAT GACCCGTTAC
ATCAAAGGTA CTGATATCGA TGGCACCAAT GTCGCCGCGG ACTCGCCTTA CCGCAAAAAC
GACCTCGCGC GCTCTCCGCT TTACGGCGCA GATGGCGAGC ACCACGAGAC CAACCTCGAA
GCCAAATACG TAGTGCAAAG CGGCCCGGCC AAGAACTTGT CCTTCCGCGC ACGTCAGGCA
TGGCACCGCG CCAACGCCGA CCAGGGCGAA GGCGACGTCA ACGAGTTCCG CCTGATCGTC
GATTACCCGA TCTCGATCCT GTAA
 
Protein sequence
MRVMKWSAIA LAVTAASAQM ATAAPFVSDQ ADAKGFVEGS TLDLKLRNYY FNRDNKNGNS 
DLRDWTQGIW ANFSSGYTQG TIGVGVEAFG YGGLRLWGLD KYSGSGNLVT DSNGDNEATQ
GKLGGAVKFR ISKTELKVGD MQPTSPVFGV GGSRLLPQTA SGLSLQSSEI AGLDLEAGHF
YSGTSQDDTS HNGSIWATYA GVPANSADFA GGKYAITDGL GVAFYAAKLE DIWDQYYGNV
NYALPLGNDQ SLAFDANIYR TVDEGSAKAG SISNTTFSGS AAYSFLAAHT VTLAFQKVNG
DTPFDYIGIG DNNRGGDSIF LNNSVQYSDF NGPGEKSWQV RYDLNMEPYG VPGLSFMTRY
IKGTDIDGTN VAADSPYRKN DLARSPLYGA DGEHHETNLE AKYVVQSGPA KNLSFRARQA
WHRANADQGE GDVNEFRLIV DYPISIL