Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1400 |
Symbol | |
ID | 3366897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 1586621 |
End bp | 1587964 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637651741 |
Product | outer membrane porin |
Protein accession | YP_234489 |
Protein GI | 66044648 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.248292 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGTGA TGAAGTGGAG CGCAATCGCA CTGGCCGTTA CGGCAGCCAG CGCCCAAATG GCAACAGCCG CACCTTTCGT CAGCGATCAG GCTGATGCCA AGGGCTTTGT GGAAGGCAGC ACGCTTGACC TGAAGTTGCG CAACTATTAT TTCAACCGTG ACAACAAAAA CGGCAATAGT GATTTGAGAG ACTGGACCCA AGGTATCTGG GCCAACTTCA GCTCCGGCTA CACCCAAGGC ACTATTGGTG TCGGCGTGGA AGCATTCGGC TACGGGGGCC TCAGGCTTTG GGGTCTCGAC AAATACTCAG GCTCCGGAAA TCTGGTCACT GATTCCAATG GTGATAACGA AGCCACGCAG GGCAAGCTCG GCGGCGCTGT AAAATTTCGT ATATCGAAGA CTGAGTTGAA AGTCGGTGAC ATGCAGCCCA CAAGCCCAGT GTTTGGGGTT GGCGGTTCGC GCCTGCTACC TCAAACAGCT AGCGGTCTGA GTCTGCAAAG TAGCGAGATT GCAGGCCTTG ATCTTGAAGC GGGGCACTTC TACTCAGGCA CCAGCCAGGA CGATACCAGT CATAATGGCA GCATCTGGGC AACTTATGCT GGCGTCCCAG CCAACAGTGC AGATTTCGCT GGCGGCAAAT ACGCAATTAC TGACGGCCTT GGCGTTGCAT TCTATGCCGC CAAGCTGGAA GACATCTGGG ATCAGTACTA CGGCAACGTG AACTATGCAC TGCCCCTAGG CAATGATCAG TCGCTGGCAT TCGATGCGAA CATTTATCGC ACCGTTGACG AAGGCAGCGC CAAAGCCGGC TCGATCAGCA ACACCACGTT CTCCGGGTCC GCAGCGTATT CGTTCCTTGC TGCCCATACC GTGACCCTGG CGTTCCAGAA GGTCAACGGT GACACCCCGT TCGACTACAT CGGGATTGGT GACAATAATC GTGGTGGCGA CTCGATCTTC CTGAACAACT CGGTCCAGTA CTCCGACTTC AATGGTCCGG GTGAGAAATC CTGGCAGGTT CGCTATGACC TGAACATGGA GCCTTATGGC GTTCCTGGTC TGAGCTTCAT GACCCGTTAC ATCAAAGGTA CTGATATCGA TGGCACCAAT GTCGCCGCGG ACTCGCCTTA CCGCAAAAAC GACCTCGCGC GCTCTCCGCT TTACGGCGCA GATGGCGAGC ACCACGAGAC CAACCTCGAA GCCAAATACG TAGTGCAAAG CGGCCCGGCC AAGAACTTGT CCTTCCGCGC ACGTCAGGCA TGGCACCGCG CCAACGCCGA CCAGGGCGAA GGCGACGTCA ACGAGTTCCG CCTGATCGTC GATTACCCGA TCTCGATCCT GTAA
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Protein sequence | MRVMKWSAIA LAVTAASAQM ATAAPFVSDQ ADAKGFVEGS TLDLKLRNYY FNRDNKNGNS DLRDWTQGIW ANFSSGYTQG TIGVGVEAFG YGGLRLWGLD KYSGSGNLVT DSNGDNEATQ GKLGGAVKFR ISKTELKVGD MQPTSPVFGV GGSRLLPQTA SGLSLQSSEI AGLDLEAGHF YSGTSQDDTS HNGSIWATYA GVPANSADFA GGKYAITDGL GVAFYAAKLE DIWDQYYGNV NYALPLGNDQ SLAFDANIYR TVDEGSAKAG SISNTTFSGS AAYSFLAAHT VTLAFQKVNG DTPFDYIGIG DNNRGGDSIF LNNSVQYSDF NGPGEKSWQV RYDLNMEPYG VPGLSFMTRY IKGTDIDGTN VAADSPYRKN DLARSPLYGA DGEHHETNLE AKYVVQSGPA KNLSFRARQA WHRANADQGE GDVNEFRLIV DYPISIL
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