Gene Psyr_1303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1303 
Symbol 
ID3366798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1478451 
End bp1480073 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content61% 
IMG OID637651642 
Producthistidine kinase, HAMP region: chemotaxis sensory transducer 
Protein accessionYP_234392 
Protein GI66044551 
COG category[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00176405 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAAGAACT GGACCTTGCG CCAACGGATT CTGGCGAGTT TCGCCGTCAT CATCGCAATC 
ATGTTACTGA TGGTCGTTGT ATCTTATTCA CGGTTGTTGT CCATCGAGTC CAGCGAGGAA
GATGTGCGGC TTGATGCGTT GCCCGGCGTC TACTACAGCA CCCTGGTGCG CAGTGCCTGG
GGCGAGAGTT ACATCCGCAC GCTGGAGCTG ATTGCCGAAG GGCAGGGGCG GCCGCTGACC
AAGCAGGAAC GAGACCAGTT TCAGGGCTTT GACGAAAACC TGCAGGCACA GATGGACGGC
TACAAGAAGT CCATCTTCGA TGATACGGAC AGAGACAGCT TCGCGCTTTT CGAAAAGCGC
CGCGAGGCCT ATTCGCGCAT GCTCGCCGAT GTTCACGCCA AGTACGATCG CGGCGACTAC
GCAGGCGCGC GCGCCGAGTT CTATGGCGAA GTCAACCCGG TCTGGCTCGC GGGCCGCAAG
CAGCTCAATG ATCTTATCGT GGCCAACAAA CAGCTGGCGG ATCAGGCCAC CACCAATATC
GTCAATGCCG TGCTGGCTGC CAAGATCAGC ATGGTGCTCT CTCTGCTGAT CGCGGTCATG
GCCGCAGCGG CCTGCGGGCT GTTGTTGATG CGTTCGATCA TGGCACCGAT GCAACTGATC
GTGCGGATCC TGGACGTCAT GCGTACCGGC GACCTGAGCA CCCGCTTGAG CCTGTCCCGC
AAGGACGAGT TCAATGCCGT CGAGACCGGC TTCAACGACA TGGTCACCGA GCTCACCGCG
CTGGTTGCGC AGGCGCAGCG CTCTTCGGTA CAGGTCACCA CATCGGTGAC GGAAATCGCT
GCAACGTCCC GCCAGCAGCA GGCTACCGCC ACCGAGACCG CTGCAACCAC CACCGAGATC
GGCGCCACAT CGCGGGAAAT TGCCGCCACC TCGCGGGATC TGGTGCGGAC CATGACCGAA
GTCACCTCGG CGGCAGACCA GGCGTCGGTG CTCGCCGGCT CCGGCCAGCA GGGCCTGGCA
CGCATGGAAG ACACCATGCA TCAGGTGATG GGCGCTGCCA ATCTGGTCAA CGCCAAGCTG
GCGATCCTCA ACGAGAAGGC CGGCAACATC AATCAGGTCG TCGTCACTAT CGTCAAGGTC
GCCGACCAGA CCAACCTGCT GTCGCTCAAT GCCGCCATCG AGGCCGAGAA GGCCGGTGAG
TACGGTCGCG GGTTTGCAGT GGTTGCCACC GAGGTCCGTC GCCTCGCCGA CCAGACGGCT
GTCGCCACTT ATGACATCGA GCAAATGGTG CGTGAAATCC AGTCGGCGGT GTCTGCTGGG
GTGATGGGCA TGGACAAGTT TTCCGAAGAG GTGCGCCGCG GCATGTTCGA GGTCACGCAG
GTCGGCGAGC AATTGTCGCA GATCATCCAT CAGGTTCAGG CGTTGGCACC CCGTGTGCTG
ATGGTCAACG AAGGCATGCA GGCCCAGGCC ACCGGCGCCG AACAGATCAA CCAGGCGCTG
GTGCAACTGG CGGATGCCAG CAGCCAGACC GTCGAATCAC TGCGTCAAGC CAGTTTCGCC
ATCGACGAAT TGAGTCAGGT CGCGGTCGGG CTGCGCAGTG GCGTTTCGCG TTTCAAGGTC
TGA
 
Protein sequence
MKNWTLRQRI LASFAVIIAI MLLMVVVSYS RLLSIESSEE DVRLDALPGV YYSTLVRSAW 
GESYIRTLEL IAEGQGRPLT KQERDQFQGF DENLQAQMDG YKKSIFDDTD RDSFALFEKR
REAYSRMLAD VHAKYDRGDY AGARAEFYGE VNPVWLAGRK QLNDLIVANK QLADQATTNI
VNAVLAAKIS MVLSLLIAVM AAAACGLLLM RSIMAPMQLI VRILDVMRTG DLSTRLSLSR
KDEFNAVETG FNDMVTELTA LVAQAQRSSV QVTTSVTEIA ATSRQQQATA TETAATTTEI
GATSREIAAT SRDLVRTMTE VTSAADQASV LAGSGQQGLA RMEDTMHQVM GAANLVNAKL
AILNEKAGNI NQVVVTIVKV ADQTNLLSLN AAIEAEKAGE YGRGFAVVAT EVRRLADQTA
VATYDIEQMV REIQSAVSAG VMGMDKFSEE VRRGMFEVTQ VGEQLSQIIH QVQALAPRVL
MVNEGMQAQA TGAEQINQAL VQLADASSQT VESLRQASFA IDELSQVAVG LRSGVSRFKV