Gene Psyr_1286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1286 
SymbolxerD 
ID3366781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1451032 
End bp1451928 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content62% 
IMG OID637651625 
Productsite-specific tyrosine recombinase XerD 
Protein accessionYP_234375 
Protein GI66044534 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0511461 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCA TCGACCACCC GCTGATTGAC CGGTTTCTGG ACGCGCTCTG GCTCGAGAAG 
GGGCTGTCCG ACAACACCCG GGATGCTTAC CGCAGTGACC TGGCGCTGTT CAACGGCTGG
CTGCAGGAGC GCAACGTTGA TCTGATCAGT GCCGGGCGCG AAGTGATCCT CGATCATCTT
GCCTGGCGCG TGGACAATGC CTATAAGCCA CGCTCCACTG CGCGTTTTCT GTCCGGCGCA
CGTGGCTTCT ACCGCTACTT GCTGCGCGAA AAGCTGATTG CCGTTGATCC CACCCTGCAG
ATCGACATGC CTCAATTGGG CAAACCGTTG CCCAAATCGC TTTCCGAAGC TGACGTCGAA
GCATTGCTTG CTGCTCCCGA CCTGAGCGAG CCCATCGGCG AGCGTGACCG CGCCATGCTT
GAGGTGCTGT ATGCCTGCGG TCTGCGCGTG ACCGAATTGA TCAGCCTGAC CCTGGAACAG
GTCAACTTGC GCCAGGGCGT GCTGCGCGTG ATGGGCAAAG GCAGCAAGGA GCGACTGGTG
CCCATGGGCG AAGAGTCCAT CGTCTGGGTC GAGCGTTACC TGCGCGGTGC CCGCGACGAG
TTGCTGGGCG GAAAGCCCAG CGACGTCCTG TTCCCCAGCA CCCGTGGCGA CCAGATGACC
CGCCAGACCT TCTGGCACCG TATCAAGCAT CAGGCGACGG TTGCGGGCAT CGGCAAATCC
CTGTCACCGC ACACCCTGCG CCACGCCTTC GCCACCCATC TGCTCAATCA CGGCGCCGAC
TTGCGTGTGG TGCAGATGTT GCTCGGGCAC AGTGATCTCT CGACGACGCA GATCTACACC
CATGTGGCGC GTGCGCGATT GCAGGAGATG CATGCCAGGC ATCATCCGCG CGGTTAG
 
Protein sequence
MAAIDHPLID RFLDALWLEK GLSDNTRDAY RSDLALFNGW LQERNVDLIS AGREVILDHL 
AWRVDNAYKP RSTARFLSGA RGFYRYLLRE KLIAVDPTLQ IDMPQLGKPL PKSLSEADVE
ALLAAPDLSE PIGERDRAML EVLYACGLRV TELISLTLEQ VNLRQGVLRV MGKGSKERLV
PMGEESIVWV ERYLRGARDE LLGGKPSDVL FPSTRGDQMT RQTFWHRIKH QATVAGIGKS
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVARARLQEM HARHHPRG