Gene Psyr_1283 details

Gene Information

• Locus tag: Psyr_1283
• Symbol: rimM
• ID: 3366778
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. syringae B728a
• Kingdom: Bacteria
• Replicon accession: NC_007005
• Strand: +
• Start bp: 1449236
• End bp: 1449775
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637651622
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_234372
• Protein GI: 66044531
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.896512
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGCGA CGCCTGCATC TGCCGACGAT CTGATCGTCA TTGGCAAGAT TTACTCGGTT 
CATGGCGTTC GCGGCGAAGT GAAGGTTTAT TCCTTTACTG ATCCGATTGG AAACCTGTTG 
GACTACAAAA CCTGGACGCT TCGGCGCGAA GGCAGCGTTG ATAAACAGGT GGAGCTGGTC 
AGCGGACGCT TGCAAAGCAA GTTTCTGGTC ACAAAGCTCA AGGGTCTCGA TGATCGTGAA 
GAAGCGCGTC TTCTGTCCGG TTACGAAATC TGCGTGCCGC GTAACCTGTT CCCTGATCTG 
GACGATGGCG AGTACTACTG GTACCAGCTT GAAGGCCTCA AGGTCATCGA CCAACTCGGG 
CAACTGCTCG GGAAAATCGA TCACCTGCTC GAAACCGGTT CGAACGATGT AATGGTTGTA 
AAGCCCTGCG CGGGTAGCCT GGATGATCGC GAACGCCTGT TGCCCTATAC GGAGCAATGC 
GTGTTGGCAA TCGATATGGC TGCTGGCGAG ATGAAGGTGG ATTGGGACGC GGACTTCTGA 

 

Protein sequence

MNATPASADD LIVIGKIYSV HGVRGEVKVY SFTDPIGNLL DYKTWTLRRE GSVDKQVELV 
SGRLQSKFLV TKLKGLDDRE EARLLSGYEI CVPRNLFPDL DDGEYYWYQL EGLKVIDQLG 
QLLGKIDHLL ETGSNDVMVV KPCAGSLDDR ERLLPYTEQC VLAIDMAAGE MKVDWDADF