| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1230 |
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| Symbol | secD |
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| ID | 3366725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 1388001 |
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| End bp | 1389869 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637651569 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_234319 |
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| Protein GI | 66044478 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.888537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACA AATACCCTCT GTGGAAATAC GTACTGATCC TGGCGGTGCT GGTGGTCGGT
TTTATTTATT CCGCACCCAA TCTCTACCCT GATGATTCTG CCATCCAGAT CAGCGGCGCA
AGCACTGCGC TGCAAGTCAA TCAGGCGGAC GTGGATCGTG CAGCCAAGGC GCTTGCCGAT
GCCGGCATCT CGGTCAAGGC TTCTTCTCTG GCCGAGAATG GCAAGGGCGG TTTGTTGCGT
CTGAGCAAGC AGGAAGACCA GTTGCCAGCC AAGGATGTCG TGCGCAAGGC GTTGGGTGAC
GACTATGTCG TTGCACTGAA CCTGGCGCGT ACCACGCCGA CCTGGTTGCG TAACCTGGGT
GCAAGCCCGA TGAAGCTCGG TCTCGACCTG TCCGGCGGTG TGCACTTCCT GCTGGAAGTC
GACATGGACA AGGCGATCGA TGCACGTCTG AAAGTCTACG AAGGCGAAGT CAAATCCCTG
TTGCGCAAGG AAAAGGTGCG TTATCGCAGC CTGCCGCAGC TGGGCAATGT GATTCAGCTG
GGCTTCACCG ACGATGCAGA GCGCGAGCAG GCTCGTGCAC TGGTGCGCAA GAGCTTTACC
GATTTCGAAA TCACGCCTGC CGAGCTGAAC GGTATCCCTG TACTGCGCAT GGCGCTGACG
CCGGCCAAGC TGGCCGAGAT TCGTGAATAC TCGATCAAAC AGAACCTGAC CACCGTCCGT
AACCGGGTCA ACGAGCTGGG TGTTGCCGAG CCGCTGGTTC AGCGTCAGGG CGCCAACCGC
ATCGTGGTCG AGTTGCCGGG TGTGCAGGAC ACGGCCGAAG CCAAGCGTAT TCTGGGCAAG
ACCGCCAACC TCGAATTCCG TCTGGGTGCA GGCCCGGATG ATTCGAAAGG CACCACCGAG
ATGTTCGAAT TCCGCGAAGG CGGTCGTCCG GCAGCGGCGG TGGAGCGTGG TCTGATCATT
ACCGGTGATC AGGTGACTGA CGCCAAGGCC AGCTTCGACG AGCATGGTCG TCCACAGGTG
AACATCAACC TCGATGGTCA TGGTGGCGAA CTGATGAGCC GTGCAACCCG CAGCAATGTG
GGACGCAGCA TGGCGGTGAT CTTCATCGAA CAGCGTCCGA CCACCACCTA CACCAGGCAG
ATGGTCGACG GTGTCGAGAA AGACGTGCCG GTGCAGACCT TCAAGGAAGA CAAGAAAATC
ATCAGCCTGG CGACCATCCA GTCGCCACTG GGCAGTCAGT TCCGGATTAC CGGTCTGAAC
GGTCAGGGTG AATCTTCCGA GCTGGCGCTG CTGTTGCGTG CCGGTGGTCT GGCGGCACCG
ATGTACTTCG CCGAAGAGCG CACCATTGGT CCTAGCCTGG GTGCCGACAA CATCACCAAG
GGTATCGACG CTTCCTTGTG GGGCATGCTG TTCGTCTCGA TCTTCATCAT GGCGATCTAC
CGTTTCTTCG GTCTGATCGC GACTGTCGCA CTGGCCCTGA ACATGGTCAT GCTGCTGGCC
TTGATGTCCT TGCTGGGGGC AACGCTGACC CTGCCGGGTA TCGCCGGTAT CGTGTTGACC
ATGGGTATGG CGGTGGACGC CAACGTGCTG ATCTTCTCGC GGATTCGTGA GGAGATCGCC
AACGGCATGA CGGTCCAGCG TGCTATCAAC GAAGGTTTCG ATCGTGCCTA CACGGCGATC
CTCGACGCCA ACCTGACGAC GCTGCTGGTC GGCGGCATCC TCTTTGCAAT GGGCACCGGC
CCGGTCAAAG GGTTTGCGGT GACCATGTCG CTCGGGATCT TTACCTCGAT GTTCACGGCC
ATCATGGTGA CCCGCGCTAT GGTCAACCTG ATCTACGGCG GTCGTGACTT CAAGAAGTTG
TGGATTTAA
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| Protein sequence | MLNKYPLWKY VLILAVLVVG FIYSAPNLYP DDSAIQISGA STALQVNQAD VDRAAKALAD
AGISVKASSL AENGKGGLLR LSKQEDQLPA KDVVRKALGD DYVVALNLAR TTPTWLRNLG
ASPMKLGLDL SGGVHFLLEV DMDKAIDARL KVYEGEVKSL LRKEKVRYRS LPQLGNVIQL
GFTDDAEREQ ARALVRKSFT DFEITPAELN GIPVLRMALT PAKLAEIREY SIKQNLTTVR
NRVNELGVAE PLVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLGA GPDDSKGTTE
MFEFREGGRP AAAVERGLII TGDQVTDAKA SFDEHGRPQV NINLDGHGGE LMSRATRSNV
GRSMAVIFIE QRPTTTYTRQ MVDGVEKDVP VQTFKEDKKI ISLATIQSPL GSQFRITGLN
GQGESSELAL LLRAGGLAAP MYFAEERTIG PSLGADNITK GIDASLWGML FVSIFIMAIY
RFFGLIATVA LALNMVMLLA LMSLLGATLT LPGIAGIVLT MGMAVDANVL IFSRIREEIA
NGMTVQRAIN EGFDRAYTAI LDANLTTLLV GGILFAMGTG PVKGFAVTMS LGIFTSMFTA
IMVTRAMVNL IYGGRDFKKL WI
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