| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1174 |
|---|
| Symbol | |
|---|
| ID | 3366668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1327638 |
|---|
| End bp | 1329059 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637651515 |
|---|
| Product | sugar transporter |
|---|
| Protein accession | YP_234266 |
|---|
| Protein GI | 66044425 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.63081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCTA GTAGCACCTC AGCAGCGGCG GGTCAGCAAG GCCGGCAACG CGCTGCATCG
AATCGACTCA TCTTTATCTC CGTGCTTGTG GCGACCATGG GCGCGCTGGC GTTCGGGTAT
GACACTGGCA TCATCGCCGG CGCCCTGCCG TTCATGACCC TGCCCGCCGA CCAGGGCGGC
CTGGGTCTGG ATGCGTACAG CGAAGGGATG GTCACCGCGT CACTGATTGT CGGCGCCGCG
TTCGGCTCGC TTGCCAGCGG CTATATCTCC GACCGCTTCG GACGCCGCCT CACCTTACGC
CTGCTGTCAG TGCTGTTCAT CGCCGGCGCA CTGGGCACCG CCATTGCACC GTCCATTCCG
TTCATGATCG CCGCGCGCTT CGTGCTGGGT ATCGCGGTGG GCGGCGGCTC TGCAACAGTG
CCGGTGTTCA TCGCCGAGAT CGCAGGCCCG TCACGGCGTG CGCGGCTGGT CAGCCGTAAC
GAACTGATGA TCGTCAGCGG CCAGTTGCTC GCCTATGTGC TGAGTGCGGT CATGGCCGCC
TTGCTGCATA CACCGGGGAT CTGGCGTTAC ATGCTGGCAG TCGCCATGGT GCCAGGGGTG
TTGCTGCTGG TAGGTACGTT CTTCGTACCC GCGTCGCCAC GCTGGCTGGC CTCCAAAGGC
CGTTTCGACG AAGCGCAGGA CGTGCTGGAG CAACTGCGCC CCAGCAAACA GGACGCACAG
CGCGAAGTCG ACGAGATGAA GGCGCAGGAC GAAGAAGCTC GTCATCGTCC CAAAGCAAGA
GAATTGCTGC GTCAGCGCTG GGTCATCAAG TTGCTGCTGA TCGGTGTAGG TCTGGGCTTT
ACCGCGCAGT TCACCGGGGT GAACGCGTTC ATGTACTACA CGCCGATCAT TCTCAAGAAC
ACCGGGATGG GCACCAACGC TGCGTTGACC GCGACGATCG GCAACGGCGT GGTGTCAGTC
ATCGCGACCT TGCTGGGCAT CTGGGCCATC GGCCGCTATG GGCGTCGGCA TTTGCTGATG
ACCGGTCTGG TCATCGTCAT TCTGATGCAG GCAGCGCTCG GTTGCGTGTT GCAGTTCATG
CCGCAGAACA TGACCCAGAG CTATACCGCC CTGGCCTGCA TTCTGGTGTT TCTGCTGTTC
ATGCAGATGT GCATCTCGCC GGTCTACTGG CTGCTGATGT CAGAACTTTT CCCGATGCAG
GTGCGCGGTT TGCTGACCGG CACGGCCGTA TCGATGCAGT GGTTGTTCAA CGCATCGGTA
GCGTTCACTT TCCCGATCGC AGTCGATACC ATCGGCAACC CGACGTTCTT CATCTTCGCC
GCCATCAACA TTGGCTCGTT GATTTTCGTG TTCCTGTGCC TGCCGGAAAC CAAGGGCAAG
TCGCTGGAGC AGATCGAAAA GCATCTGAAG AAGGAGCTGT AA
|
|---|
| Protein sequence | MSSSSTSAAA GQQGRQRAAS NRLIFISVLV ATMGALAFGY DTGIIAGALP FMTLPADQGG
LGLDAYSEGM VTASLIVGAA FGSLASGYIS DRFGRRLTLR LLSVLFIAGA LGTAIAPSIP
FMIAARFVLG IAVGGGSATV PVFIAEIAGP SRRARLVSRN ELMIVSGQLL AYVLSAVMAA
LLHTPGIWRY MLAVAMVPGV LLLVGTFFVP ASPRWLASKG RFDEAQDVLE QLRPSKQDAQ
REVDEMKAQD EEARHRPKAR ELLRQRWVIK LLLIGVGLGF TAQFTGVNAF MYYTPIILKN
TGMGTNAALT ATIGNGVVSV IATLLGIWAI GRYGRRHLLM TGLVIVILMQ AALGCVLQFM
PQNMTQSYTA LACILVFLLF MQMCISPVYW LLMSELFPMQ VRGLLTGTAV SMQWLFNASV
AFTFPIAVDT IGNPTFFIFA AINIGSLIFV FLCLPETKGK SLEQIEKHLK KEL
|
|---|
| |