| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1159 |
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| Symbol | |
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| ID | 3366653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1311737 |
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| End bp | 1313983 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637651500 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_234251 |
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| Protein GI | 66044410 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCAC AGGGCTATGA GCACGACCAC GTCATACCGA CGAATGTTGA AGATGTTGCC
AAGGTATTGC AGGCCGCTGC TCACTCCGCC TCGTGCACCG CCGCTTTGCT GATGGTATCC
AGCGCTACAG GCTGGGAACA GTTGGTCAGC TGCGGCCAAA GCCTGCTCAA AGCGGATGAG
GCATGGTTGA GGATGGTCTC GTCGTATGGC GACGTGGTGC TGGTCGGTCA GGACAGTCCG
GCGAATGCGA TCCAGACCAA CAGCCCGGGG ACTACCCTGA TCTACGTTGC TATCCGTGGC
TTCAGGCATG AGTTGCTGGG CGCGATGCTG TTGAGCAACA GCGATGGCGC AATGGTGCTG
AGCGCTGCGC AACGCTATGC GCTGCAGGCC CAGGCGGTTC ATATTCGTAC CTACCTGCAA
CCGGGACGTG ATCCCGAGGC CAACAATCCG CTGGTCACCT CGTTCGAACG CCTGCGCTTG
CTTGAATCGG TGGTCATCAA CGCCAATGAC GCGATTCTTA TCACCGAAGC GGAACCCATC
GATCTGCCCG GCCCGCGTAT CGTCTATTGC AACCCTGCGT TTCTGGCAAT TACCGGCTTC
ACGGAAGAGG AAGTCATAGG CCGCACGCCC CGGATTCTGC AGTGTGAGGA CACCAGTCGG
GCAACGCTGG ACATTATTCG CGAGGCTCTC AGTCACTGGC GACCGGTTGA AGTCGAATTG
CTCAACACCC GCAAGGATGG CAGCCAGTTC TGGGTCGAGT TGAGCATTGT GCCGGTGGCC
AACGAAAAAG GCTGGTTCAC CCATTGGGTA TCCGTGCAGC GCGATATCAC CGAGCGCAAG
GAGTCTCAGC AACTGGCTCA GCGAGCTCGT CTGGAGTGGG AGGAAAAGCT TGCGTTACAG
AGCCGGCTGG AGGAACGCGA GCGCATGTCC GAAGAGCTGA CCTATATCGC TTTTCACGAT
GAGCTGACCT CACTGTTCAA CCGCGCTTAC CTGATGAACG AATTGACCAC GGCATTTGAA
ACCCGTAAGT CTCGTTACGA ACGGGCAACG GTACTCTTTC TGGACCTGGA CGGTTTCAAG
GTGGTCAACG ACAGCATGGG GCACCTGGCC GGTGACCAGT TGCTCAAGGG GGTCGCGAAC
CGATTGCAGA CCTGCGTTCG CTCGAATGAT GTGTTGGCGC GAATCGGCGG CGACGAATTT
GCGATCCTGC TGATGGGCAA GGATCAGCCG GAGACTGCCG TAAAAATGGC TGAACGCATC
GTGAGCCAGT TGAACACGGC AATCCAGATC GAAGGCCAGG ACATTTTCAT CTCCTGCAGC
ATCGGCATCG TCAGCGCAGG CGAAAGTCAT ACCAAGCCCG AAGAGTTGCT GCGTGACGCC
GATGTGGCCA TGTACTCCGC GAAAAAACAG GGCCGAGGAC GCTGGAGCAT CTTCAACACC
TCAATGCGCG AGGCGGCGAT CGACACGCTG ATGATTCAGA ACGCGTTGCG CCAGGCACTG
GAAGACAAGG ATTTCCTGGT CTTTTATCAG CCGATCTACA GCGGCAACTG TGAACACCTG
GTCGGGGTCG AAGCCCTGGT CAGATGGAAC CATGCCACCA TGGGCATCAT TTCTCCCGAT
GCGTTCATCC CGATTGCCGA AGACCTGGGG ATTATTCATG AGCTGGGTGC CTGGGTAATG
CACAAAGCCT GCAGCGAAGT GCAGGCCTGG CGCAAGGAGT TCTCTCATCT GGACCTCAGG
CTCAATGTCA ACGTGTCCGG AAAAGAGTTG AGCCATCCCG GATTCGTCGA TCGGGTAACA
CGGATCATTG CCTCCACCGG CCTGCCTGCT ACACAACTGC AGATCGAGGT CACCGAGTCG
GTGTTTCTCT ATCAGCCTGA CGCGATCGCG GAGATTCTCC GGCAGATCAG GCAGCTTGGC
GTGAGAGTGG CGCTGGATGA CTTCGGCACG GGTTACAGCT CGCTCGGCTA CATCGACCGT
TACCCGATCG ATGCCGTGAA GATCGATCGG TCCTTCGTGT CCCGAATGAT GACGTATGAG
CGCAGCGAAG CCATTGTCAG CAGCATCCTG TCGCTGGGAC GAGCGCTGAA CCTGGATATC
ACGGCGGAAG GTGTGGAGAC AGCAGAACAA TACAACCTGC TGCGCAAAAT GGGCTGCCCT
TACTTTCAGG GTTATCTGCT GAACAGACCG ATGCGCTCAG AGGCATTGCT GCATATCATC
AAATCCGCAG CCGAATGCAC TGCCTGA
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| Protein sequence | MNPQGYEHDH VIPTNVEDVA KVLQAAAHSA SCTAALLMVS SATGWEQLVS CGQSLLKADE
AWLRMVSSYG DVVLVGQDSP ANAIQTNSPG TTLIYVAIRG FRHELLGAML LSNSDGAMVL
SAAQRYALQA QAVHIRTYLQ PGRDPEANNP LVTSFERLRL LESVVINAND AILITEAEPI
DLPGPRIVYC NPAFLAITGF TEEEVIGRTP RILQCEDTSR ATLDIIREAL SHWRPVEVEL
LNTRKDGSQF WVELSIVPVA NEKGWFTHWV SVQRDITERK ESQQLAQRAR LEWEEKLALQ
SRLEERERMS EELTYIAFHD ELTSLFNRAY LMNELTTAFE TRKSRYERAT VLFLDLDGFK
VVNDSMGHLA GDQLLKGVAN RLQTCVRSND VLARIGGDEF AILLMGKDQP ETAVKMAERI
VSQLNTAIQI EGQDIFISCS IGIVSAGESH TKPEELLRDA DVAMYSAKKQ GRGRWSIFNT
SMREAAIDTL MIQNALRQAL EDKDFLVFYQ PIYSGNCEHL VGVEALVRWN HATMGIISPD
AFIPIAEDLG IIHELGAWVM HKACSEVQAW RKEFSHLDLR LNVNVSGKEL SHPGFVDRVT
RIIASTGLPA TQLQIEVTES VFLYQPDAIA EILRQIRQLG VRVALDDFGT GYSSLGYIDR
YPIDAVKIDR SFVSRMMTYE RSEAIVSSIL SLGRALNLDI TAEGVETAEQ YNLLRKMGCP
YFQGYLLNRP MRSEALLHII KSAAECTA
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