Gene Psyr_1113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1113 
Symbol 
ID3366607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1261293 
End bp1262588 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content58% 
IMG OID637651454 
Productextracellular solute-binding protein 
Protein accessionYP_234205 
Protein GI66044364 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.561117 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCCA TGTCACGTCT CGCTGTTGTC ATCTCTCTCG CTTCGTTGTT CCCTCTGAGC 
GCTAACGCCG CTAACGCCGC TGACTCCAAA GGCACTGTTG AAGTGGTGCA CTGGTGGACG
TCGGGTGGCG AAAAGGCTGC AGTCGATGTT CTGAAAGCTC AGGTTGAAAA GGACGGCTTC
GCCTGGAAGG ACGGCGCCGT TGCAGGCGGC GGCGGCTCCA CGGCCATGAC CGTGCTCAAG
AGTCGCGCGG TTGCCGGCAA TCCTCCTGGT GTGGCCCAGA TCAAAGGCCC GGACATTCAG
GAGTGGGCCT CTACCGGTCT GCTCGATACC GAGGCGCTGA AAGAGGTCGC CAAGTCCGAG
AAGTGGGACT CCCTGCTGGA CAAGAAAGTC TCCGACACCG TGAAGTACGA GGGCGATTAC
GTAGCCGTGC CGGTGAACAT TCACCGCGTC AACTGGTTGT GGATCAACCC TGAAGTCTTC
AAGAAAGCCG GTATCGACAA GGCACCCACT ACGCTCGAAG AATTCTACGC CGCGGGCGAC
AAGCTGAAAA AAGCCGGCTT CATCCCGCTG GCGCATGGCG GTCAGCCTTG GCAGGACAGC
ACCGTGTTCG AAGCCGTTGT GCTCTCGGTC ATGGGCGCTG ACGGTTACAA GAAAGCCCTG
GTCGATCTGG ACAAGGATGC GCTGACCGGT GAAGGCATGG TCAAGTCGCT TACCGAACTC
AAGAAAGTCG CGACTTACAT GGATGCCGAC GGCAAGGGCC AGGACTGGAA CCTGGAAGCT
GCCAAGGTCA TCAATGGCAA GGCCGGCATG CAGATCATGG GTGACTGGGC CAAGAGTGAA
TGGACCGCGG CCAAGAAGGT CGCCGGCAAG GACTACCAGT GCGTAGCTTT CCCGGGCACC
GACAAGGCGT TTACCTATAA CATCGACTCG CTGGCCGTGT TCAAGCAGAA AGACGAGGGT
ACGACTGCCG CACAGCAGGA TCTGGCCAAG GTCGCCATGG GTGAGGACTT CCAGAAGGTC
TTCAGCATCA ACAAGGGGTC GATCCCGGTT CGTGAGGACA TGCTGTCCGA CATGAGCAAG
TACGGTTTCG ATTCGTGTGC GCAAACTGCT GCGAAGGACT TCCTGGCTGA TTCCAAGACC
GGCGGTCTGC AGCCAAGCAT GGCGCACAAC ATGGCAACTA CGCTGGCAGT GCAGGGCGCG
TTCTTCGATG TGGTGACCAA CTACATCAAC GACCCGTCAG CCGATCCGGC AGCAACCGCC
AAAAAGCTGG CCACTGCGAT CAAATCTGCC CAGTAA
 
Protein sequence
MNSMSRLAVV ISLASLFPLS ANAANAADSK GTVEVVHWWT SGGEKAAVDV LKAQVEKDGF 
AWKDGAVAGG GGSTAMTVLK SRAVAGNPPG VAQIKGPDIQ EWASTGLLDT EALKEVAKSE
KWDSLLDKKV SDTVKYEGDY VAVPVNIHRV NWLWINPEVF KKAGIDKAPT TLEEFYAAGD
KLKKAGFIPL AHGGQPWQDS TVFEAVVLSV MGADGYKKAL VDLDKDALTG EGMVKSLTEL
KKVATYMDAD GKGQDWNLEA AKVINGKAGM QIMGDWAKSE WTAAKKVAGK DYQCVAFPGT
DKAFTYNIDS LAVFKQKDEG TTAAQQDLAK VAMGEDFQKV FSINKGSIPV REDMLSDMSK
YGFDSCAQTA AKDFLADSKT GGLQPSMAHN MATTLAVQGA FFDVVTNYIN DPSADPAATA
KKLATAIKSA Q