Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1113 |
Symbol | |
ID | 3366607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1261293 |
End bp | 1262588 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637651454 |
Product | extracellular solute-binding protein |
Protein accession | YP_234205 |
Protein GI | 66044364 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.561117 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCCA TGTCACGTCT CGCTGTTGTC ATCTCTCTCG CTTCGTTGTT CCCTCTGAGC GCTAACGCCG CTAACGCCGC TGACTCCAAA GGCACTGTTG AAGTGGTGCA CTGGTGGACG TCGGGTGGCG AAAAGGCTGC AGTCGATGTT CTGAAAGCTC AGGTTGAAAA GGACGGCTTC GCCTGGAAGG ACGGCGCCGT TGCAGGCGGC GGCGGCTCCA CGGCCATGAC CGTGCTCAAG AGTCGCGCGG TTGCCGGCAA TCCTCCTGGT GTGGCCCAGA TCAAAGGCCC GGACATTCAG GAGTGGGCCT CTACCGGTCT GCTCGATACC GAGGCGCTGA AAGAGGTCGC CAAGTCCGAG AAGTGGGACT CCCTGCTGGA CAAGAAAGTC TCCGACACCG TGAAGTACGA GGGCGATTAC GTAGCCGTGC CGGTGAACAT TCACCGCGTC AACTGGTTGT GGATCAACCC TGAAGTCTTC AAGAAAGCCG GTATCGACAA GGCACCCACT ACGCTCGAAG AATTCTACGC CGCGGGCGAC AAGCTGAAAA AAGCCGGCTT CATCCCGCTG GCGCATGGCG GTCAGCCTTG GCAGGACAGC ACCGTGTTCG AAGCCGTTGT GCTCTCGGTC ATGGGCGCTG ACGGTTACAA GAAAGCCCTG GTCGATCTGG ACAAGGATGC GCTGACCGGT GAAGGCATGG TCAAGTCGCT TACCGAACTC AAGAAAGTCG CGACTTACAT GGATGCCGAC GGCAAGGGCC AGGACTGGAA CCTGGAAGCT GCCAAGGTCA TCAATGGCAA GGCCGGCATG CAGATCATGG GTGACTGGGC CAAGAGTGAA TGGACCGCGG CCAAGAAGGT CGCCGGCAAG GACTACCAGT GCGTAGCTTT CCCGGGCACC GACAAGGCGT TTACCTATAA CATCGACTCG CTGGCCGTGT TCAAGCAGAA AGACGAGGGT ACGACTGCCG CACAGCAGGA TCTGGCCAAG GTCGCCATGG GTGAGGACTT CCAGAAGGTC TTCAGCATCA ACAAGGGGTC GATCCCGGTT CGTGAGGACA TGCTGTCCGA CATGAGCAAG TACGGTTTCG ATTCGTGTGC GCAAACTGCT GCGAAGGACT TCCTGGCTGA TTCCAAGACC GGCGGTCTGC AGCCAAGCAT GGCGCACAAC ATGGCAACTA CGCTGGCAGT GCAGGGCGCG TTCTTCGATG TGGTGACCAA CTACATCAAC GACCCGTCAG CCGATCCGGC AGCAACCGCC AAAAAGCTGG CCACTGCGAT CAAATCTGCC CAGTAA
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Protein sequence | MNSMSRLAVV ISLASLFPLS ANAANAADSK GTVEVVHWWT SGGEKAAVDV LKAQVEKDGF AWKDGAVAGG GGSTAMTVLK SRAVAGNPPG VAQIKGPDIQ EWASTGLLDT EALKEVAKSE KWDSLLDKKV SDTVKYEGDY VAVPVNIHRV NWLWINPEVF KKAGIDKAPT TLEEFYAAGD KLKKAGFIPL AHGGQPWQDS TVFEAVVLSV MGADGYKKAL VDLDKDALTG EGMVKSLTEL KKVATYMDAD GKGQDWNLEA AKVINGKAGM QIMGDWAKSE WTAAKKVAGK DYQCVAFPGT DKAFTYNIDS LAVFKQKDEG TTAAQQDLAK VAMGEDFQKV FSINKGSIPV REDMLSDMSK YGFDSCAQTA AKDFLADSKT GGLQPSMAHN MATTLAVQGA FFDVVTNYIN DPSADPAATA KKLATAIKSA Q
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