Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0984 |
Symbol | |
ID | 3366478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1114740 |
End bp | 1115588 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637651327 |
Product | peptidase M48, Ste24p |
Protein accession | YP_234078 |
Protein GI | 66044237 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00306933 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTTT CATACACTAG GAGATACACC ATGCGTCCTT CATTTGCCTT CTGTGCCTTG AGCGCTGCGT TGCTGCTCGG CGGGTGTCAG GCAGTCAATA CCACGAGTGG CGACTCGGTC GGTGTGGAGC GCAAACAGTA CATGTTCAGC ATGCTCTCGA CGGATGAAGT CAACAAAATG TACGCCCAGT CCTACCAGCA GACCGTTGGC GAGGCGACCA GCAAAGGGGT ACTGGACACC ACCAGCGCAA ATGCCAGGCG GGTCCATGCA ATCGCCGATC GACTGATTGC CCAGGCGCCC AAATTGCGAC CTGATTCGGC GCAGTGGCAG TGGGAAGTCA ACCTGATCAA GAGTGACGAA CTGAACGCCA ACTGTGGTCC TGGCGGCAAG ATCATTGTCT ACAGCGGCCT GATCGATACC CTCAAACTGA CCGACGATGA AATCGCTGCG GTCATGGGCC ACGAGATCGC CCATGCGTTG CGCGAGCACG GGCGTGAAGC GATGTCCAAG GCGTACGGTG TTTCGATGGC CAAGCAGGGC GCAGGCGCCT TGCTGGGATT GGGTCAGGAC AGCCTGGCGT TGGCAGATAC CGTGGTCAAC TACAGCCTGA CGCTGCCCAA CAGCCGCAGT AACGAGAACG AAGCTGATCT GCTCGGTCTG GAACTGGCCG CACGCGCCGG TTACAACCCT AATGCAGCGA TCACCCTGTG GCAGAAGATG ACCCAGAACT CCGGTGGTTC GCAGCCTGAG TTCATGAGCA CTCACCCGGC CTCGGAAAGT CGCATCGCCT CGTTGCAGGC TGCCATACCG AAAGTCATGC CGCTGTACCA GAAAGCCGCT AAATCCTGA
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Protein sequence | MTVSYTRRYT MRPSFAFCAL SAALLLGGCQ AVNTTSGDSV GVERKQYMFS MLSTDEVNKM YAQSYQQTVG EATSKGVLDT TSANARRVHA IADRLIAQAP KLRPDSAQWQ WEVNLIKSDE LNANCGPGGK IIVYSGLIDT LKLTDDEIAA VMGHEIAHAL REHGREAMSK AYGVSMAKQG AGALLGLGQD SLALADTVVN YSLTLPNSRS NENEADLLGL ELAARAGYNP NAAITLWQKM TQNSGGSQPE FMSTHPASES RIASLQAAIP KVMPLYQKAA KS
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