Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0947 |
Symbol | |
ID | 3366441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 1081673 |
End bp | 1083343 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637651290 |
Product | TPR repeat-containing protein |
Protein accession | YP_234041 |
Protein GI | 66044200 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCCCG CCTCGTCACA GCCTGTGCCC GCTCAAAAGG ACGCCCCGCC CGCGCCTGAA GCCAAGCCGC AGGTCTATGG CTCGTTCACT CAGGACACCC TGGTCAGCCT GTTGAGTGCG GAGCTGGCTG GCCAGCGCAA CCGCTTTGAC ATCGCCCTGG ACAACTATGT GACCCAGGCG ATCAAGACTC AGGACCCGGG GGTCTCGGAG CGCGCTTATC AGATCGCCGA GTACATGGGT GCCGATCAAT CGGCGCTGGA TACCGCACTG ATCTGGGCGA GGAACGCGCC GGGAAATCTT GAAGCGCAAC GAGCTGCCGC CATTCAACTG GCGCGCGCCG GGCGTTACGA CGATTCCCTT GTGTACATGG AGAGAGTCCT GCAAGGCCAG GGCGACACGC ACTTCGATTT TCTGGCCCTG TCGGCGGCCG AAACAGATCC GGATACCCGC AATGGTCTGC TCAAGAGCTT TGACCGACTG CTGGGCAAAT ACCCGAACAA CGGCCAGCTG ATTTTCGGCA AGGCGCTGTT GCTGCAGCAG AACGGCGATT CCGAACAATC GCTGAAACTG CTTGAAGACA ACCCGCCGAA AGAAGGTGAA ATCGCGCCGA TCCTGCTGCA CGCCCGCCTG CTGCAAAGCA TGAATCGAGG CAAGGAAGCG GTGCCCCTGC TGGAAAAAAG CATCAAGAAA TACCCCGACG ACAAGCGCCT GCGCCTGACC TATGCGCGCA TGCTCGTCGA GCAGAACCGC ATGGAAGATG CCAAAGTGCA GTTTTCCGCA CTCTTGCAGC AGTATCCGGA TGACGACGAG CTGCGCTTTT CGCTGGCCCT GGTGTGCCTT GAAGCCAAGG CCTGGGACGA AGCAGCGGGC TATCTGGAAG AGCTGATCGC CCGTGGCGCG CATGTCGATT CGGCGCATTT GAATCTGGGC CGCATCCACG AAGAGCGCGA TGACCCGCAA AGCGCGCTCA ACGAATACGC TCAGGTCGGT CCCGGCCCGG ACTTCCTGGC GGCGCAATTG CGCCAGGCCG ATATTCTGCT CAGCAACGGT AACGGTGCCG AAGCCGCCAA ACGGCTGTCC GAAGCGCGCG CCGAAGAGCC CGATTATGCA ATCCAGCTGT ACCTGATCGA AGCCGAAACC CTGACCAGCA ATGATCAACT GGACCGTGGC TGGCAGGTGC TGAATCAGGC GCTCAAGCAA TACCCGGACG ACGCCAACCT GCTGTACACC CGCGCCATGC TGGCTGAAAA ACGCAATGAT CTGGCGCAGA TGGAAAAAGA CCTGCGCACC ATCATCAAGC GCGAACCGGA AAACGCCATG GCGCTGAATG CACTGGGCTA CACCCTTTCC GATCGCACGA CGCGTTATAG CGAGGCACGC GACCTGATCG AAAAAGCCCA CAAGATCAGC CCCGACGATC CGGCAGTGCT CGACAGCCTT GGCTGGGTGA ACTACCGCCT GGGCAATCTG GACGATGCCG AGCGCTACCT GCGTCAGGCA CTCGAACGCT TCCCCGACCA CGAAGTGGCC GCCCACCTGG GCGAAGTACT CTGGGCCAAG GGCGAGCAGC GCGAAGCCAA AAAAGTCTGG GCCAAGGCCC TTGAACAACA ACCCGACAGC ACCGTCCTGC GCAGCACATT GCGACGCTTG ACCGGATCAG AGACCCTTTG A
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Protein sequence | MTPASSQPVP AQKDAPPAPE AKPQVYGSFT QDTLVSLLSA ELAGQRNRFD IALDNYVTQA IKTQDPGVSE RAYQIAEYMG ADQSALDTAL IWARNAPGNL EAQRAAAIQL ARAGRYDDSL VYMERVLQGQ GDTHFDFLAL SAAETDPDTR NGLLKSFDRL LGKYPNNGQL IFGKALLLQQ NGDSEQSLKL LEDNPPKEGE IAPILLHARL LQSMNRGKEA VPLLEKSIKK YPDDKRLRLT YARMLVEQNR MEDAKVQFSA LLQQYPDDDE LRFSLALVCL EAKAWDEAAG YLEELIARGA HVDSAHLNLG RIHEERDDPQ SALNEYAQVG PGPDFLAAQL RQADILLSNG NGAEAAKRLS EARAEEPDYA IQLYLIEAET LTSNDQLDRG WQVLNQALKQ YPDDANLLYT RAMLAEKRND LAQMEKDLRT IIKREPENAM ALNALGYTLS DRTTRYSEAR DLIEKAHKIS PDDPAVLDSL GWVNYRLGNL DDAERYLRQA LERFPDHEVA AHLGEVLWAK GEQREAKKVW AKALEQQPDS TVLRSTLRRL TGSETL
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