Gene Psyr_0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0880 
Symbol 
ID3366372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1002854 
End bp1004065 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content63% 
IMG OID637651223 
ProductMltA:3D 
Protein accessionYP_233976 
Protein GI66044135 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2821] Membrane-bound lytic murein transglycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.881399 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCTCT CTTTCAAGCC ATGGTTGCGG GGCCTGGCGC TGGTTTTGCC ACTGGCTGCG 
TTGCTGACCG CGTGTGACAA GTCCGACAAA TCTGACAAGC CGGTGACGCC GTCTGCGCCG
CCGCACACCA CGTATAGCCA GGCTGGCTGG GACGCGCTGC CTGCGGTGTC CGACGCGGAT
TTGCAGGCCG GTTTTGCCTC GTGGCGCAGC GCGTGTGTTC GTTTGAAAGC AGATGCAGTG
TGGGGGCCGA CGTGTGCGGC GGCTGCGAGT CTTGCGGCTG CGCCGGATGC TGCGCAGATT
CGCACCTTTT TGCAGGAGCA GTTGCAGGTC TACAGCCTGC GCGCCGACGG GGGTAGTGCC
GATGGTTTGA TCACCGGCTA CTACGAGCCT GTTTATCCGG GCAGCCTGAC GCAGACCGCC
ACGGCCAATG TGCCGGTGTA TGGCATTCCG GACGATCTGA TCGTGGTCAA TCTGGACAGT
ATTTACCCAG AGCTCAAAGG CAAGCGTCTG CGCGGTCGGC TTGAGGGGAG GGTGCTTAAG
CCTTACGACG ACGCTGCAAC GATCAGCACG CAGGGCTTGA ACGCGCCGGT GATTGCCTGG
CTGACCGACC CGATGGATCT GCAATTCCTG CAGATTCAGG GCTCGGGGCG CGTGAGTCTG
GAGGATGGCT CGCAGCTGCG TCTGGGCTAT GCCGATCAGA ACGGTCGTCC TTATCGCGCA
ATTGGTCGCT GGCTGGTAGA GCAGGGGCAG CTGAAGAAGG AGGACGTGAC CATGGGCAGT
ATCGCGGCCT GGGCCAAGGC GCATCCGGAG CGGATCAGCG AGCTGCTGGC GAGCAATCCC
AGCTACGTGT TTTTCGCCCG TAACCCCGAC AGCAACGAAG GCCCGCGCGG CTCGCTGAAT
GTGCCGCTGA CCCCGGGCTA CAGCGTGGCC ATCGATCGCA AGGTGATTCC GCTGGGCAGT
CTGCTCTGGC TCTCGACGAC GCGGCCGGAT GGCAGCAGCG TGGTGCGTCC GGTCGCTGCC
CAGGACACGG GCGGTGCGAT TGCCGGTGAA GTACGCGCCG ACCTGTTCTG GGGGACCGGC
GATGAGGCGG GCAAGCTGGC TGGCGACATG AAGCAGAAAG GCAATATCTG GCTGTTGTGG
CCCAAAGGCA TGCCGTTGCC TCAGTCCGCA GAAACAGCTC CTGCAGCAAC CCCGGCTGCT
GCCAGTCACT GA
 
Protein sequence
MMLSFKPWLR GLALVLPLAA LLTACDKSDK SDKPVTPSAP PHTTYSQAGW DALPAVSDAD 
LQAGFASWRS ACVRLKADAV WGPTCAAAAS LAAAPDAAQI RTFLQEQLQV YSLRADGGSA
DGLITGYYEP VYPGSLTQTA TANVPVYGIP DDLIVVNLDS IYPELKGKRL RGRLEGRVLK
PYDDAATIST QGLNAPVIAW LTDPMDLQFL QIQGSGRVSL EDGSQLRLGY ADQNGRPYRA
IGRWLVEQGQ LKKEDVTMGS IAAWAKAHPE RISELLASNP SYVFFARNPD SNEGPRGSLN
VPLTPGYSVA IDRKVIPLGS LLWLSTTRPD GSSVVRPVAA QDTGGAIAGE VRADLFWGTG
DEAGKLAGDM KQKGNIWLLW PKGMPLPQSA ETAPAATPAA ASH