| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0839 |
|---|
| Symbol | |
|---|
| ID | 3366326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 950669 |
|---|
| End bp | 951454 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637651177 |
|---|
| Product | deoxyribose-phosphate aldolase |
|---|
| Protein accession | YP_233935 |
|---|
| Protein GI | 66044094 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
|---|
| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000295758 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000077294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA TGACAGCAGA TGATGAGCGG CTGGCGCGTC AGGTCATCGG GCTGCTTGAG
CTGTTTGCCC TCAATACAGA CGACACTGAG CAGCGCATTG TCGGCATCTG TCGGCGCGCA
TGCACGCCTG TGGGACCGGT TGCAGCGGTC AGCGTCCAGC AACGTTTCGT GTGTCTGGCA
CGCACCACGC TGGATCGCTT ACAGGCTCGT CATATCAAGG TCGTCGCCGT GGTCAATTTC
CCTCATGGCA GCAGCAATGT TCAGTCGGTC ATCGCCCAGG TACGTGCTGC GCTGATGGCT
GGCGCGGATG AAATCGACGT CGTGTATCCC TTTCGCGCGC TGCTCGGCGG AGACCGGCAG
CCCGGCCTGG CGATGATCTC GGCGTGTTCG GCCTTGTGTG CCGGGCAGGT GATGCTTACA
GCGACGCTTG AAACCGGTGA CTTGCGTGAC TCGCAAATGA TCCTCGACGC TTGCCGCGAT
GCGATTGTTT CGGGCGCTGA CTTCATCAAG ACCAGCACCG GCAAGGCCGC CAGGCATGTC
ACGCCGCAGG CTGCACGGAT CATGCTGGAG TCCATTGCCG ACGTAGGCGG GCAAGTGGGG
CTGAAGGTTG CAGGCGGAAT CCGTACGTTC GACGAGGCGC GTGTTTACAT GGCACTGGTC
CGCGCGCGAT TTGGCCTGCA ATGGATCAAC GCCGGGCGCT TTCGGCTGGG CGGCTCCAGC
GTGCTGGACG ACTTGCTGGC AAGGCTCGGC CTGCTCGAGT CGCATGGTGG TGGCGATGGC
TTTTGA
|
|---|
| Protein sequence | MKEMTADDER LARQVIGLLE LFALNTDDTE QRIVGICRRA CTPVGPVAAV SVQQRFVCLA
RTTLDRLQAR HIKVVAVVNF PHGSSNVQSV IAQVRAALMA GADEIDVVYP FRALLGGDRQ
PGLAMISACS ALCAGQVMLT ATLETGDLRD SQMILDACRD AIVSGADFIK TSTGKAARHV
TPQAARIMLE SIADVGGQVG LKVAGGIRTF DEARVYMALV RARFGLQWIN AGRFRLGGSS
VLDDLLARLG LLESHGGGDG F
|
|---|
| |