| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0796 |
|---|
| Symbol | |
|---|
| ID | 3366283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 901415 |
|---|
| End bp | 902287 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637651134 |
|---|
| Product | prepilin peptidase |
|---|
| Protein accession | YP_233892 |
|---|
| Protein GI | 66044051 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTCC TCGACCTCCT GGCCAGCTCA CCCCTGGCCT TCGTCACCAC CTGCTGCATT
CTCGGCCTGA TCATCGGAAG CTTCCTCAAC GTGATCGTCT ATCGCCTGCC AATAATGATG
GAGCGCGACT GGAAAGCCCA ATCCCGAGAA CTGCTCGGCC TGCCTGCTGA ACCCGATCAA
CCCGTCTTCA ATCTGAACCG CCCCCGTTCC AGCTGCCCGC ATTGCGCACA CAAAATCCGC
CCTTGGGAGA ACCTGCCGGT GATCAGCTAT CTGCTGCTGC GTGGTAAATG CTCGCAGTGC
AAAGCGCCGA TCAGCAAACG TTACCCACTG GTCGAGCTGA CCTGCGCAGT GTTATCGGCA
TACGTGGCCT GGCATTTCGG GTTCGGCTGG CAGGCGACGG CGATGCTGGT ATTGGGCTGG
GGGCTGCTGG CGATGAGTCT GATCGATGCC GATCACCAAC TGTTACCTGA TTCTCTGGTG
CTGCCACTGC TGTGGCTGGG CCTGATCGTC AACGCTTTCG GGCTGTTCAC CTCGCTGAAT
GATGCGCTGT GGGGTGCAGT GGCCGGGTAT CTGGCACTGT GGTCGGTGTT CTGGCTGTTC
AAGCTGGTGA CCGGCAAGGA AGGCATGGGT TATGGCGACT TCAAGTTGCT GGCCATGCTG
GGCGCGTGGG GCGGCTGGCA GGTTTTGCCG TTGACCATCC TGTTATCGTC GCTGGTGGGC
GCGGTGCTCG GGGTGATCAT GATGCGCGTG CGCAGGGTCG AAAGCGGTAC GCCGATCCCC
TTTGGTCCTT ATCTGGCCAT TGCGGGGTGG ATCGCTTTGC TCTGGGGTGG TCAAATAACC
GACTCTTACA TGCAGTTTGC CGGTTTCAGA TGA
|
|---|
| Protein sequence | MPLLDLLASS PLAFVTTCCI LGLIIGSFLN VIVYRLPIMM ERDWKAQSRE LLGLPAEPDQ
PVFNLNRPRS SCPHCAHKIR PWENLPVISY LLLRGKCSQC KAPISKRYPL VELTCAVLSA
YVAWHFGFGW QATAMLVLGW GLLAMSLIDA DHQLLPDSLV LPLLWLGLIV NAFGLFTSLN
DALWGAVAGY LALWSVFWLF KLVTGKEGMG YGDFKLLAML GAWGGWQVLP LTILLSSLVG
AVLGVIMMRV RRVESGTPIP FGPYLAIAGW IALLWGGQIT DSYMQFAGFR
|
|---|
| |