Gene Psyr_0700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0700 
Symbol 
ID3366183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp803577 
End bp804545 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content62% 
IMG OID637651045 
Producttrans-hexaprenyltranstransferase 
Protein accessionYP_233806 
Protein GI66043965 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.286073 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCCC AAGCCTTCTA CCGCGCGGTG GCGGACGACT TTAGTGCCGT TGACCTTATC 
ATCAAAAAGC AACTGACGTC GCGCGTACCG CTGGTCTCGA AAATCGGCGA TTACATCACG
TCGGCAGGTG GCAAGCGCCT GCGCCCGTTG CTGGTGCTGC TGTGTGGCAA GGCACTGGGT
CGCGAAGGCG ATGATGTTCG CCTGCTCGCA GCCACCATTG AATTCCTGCA CACCGCGACC
CTGCTGCATG ACGACGTGGT CGACATGTCC GGCATGCGTC GTGGTCGCTC CACCGCCAAC
GCGCTCTGGG GCAATGCGCC CAGCGTATTG GTGGGCGACT TCCTTTATTC GCGCTCGTTC
GAAATGATGG TCGAGCTGGG CTCGATGGAA GTCATGAAGA TTCTGTCCAA GGCAACCCGC
ATCATCGCCG AAGGCGAAGT GTTGCAGCTC TCGAAGATTC GTGACGCCAG CACCACCGAA
GAAACCTACA TGGAAGTGAT TCGTGGCAAG ACAGCCATGC TGTTCGAAGC CTCGACCCAC
AGCGCCGCTG CCCTGTGCAA CGCCCCCCAG GAACAGAGCG AAGCACTGCG CACGTTCGGC
GACCACCTGG GTGTGGCCTT CCAGCTGGTG GATGACCTGC TCGACTACCG TGGCGATGCC
GAGACACTGG GCAAGAACGT CGGTGACGAC CTCGCCGAAG GCAAGCCGAC CCTGCCGCTG
ATCTACACCA TGCGCGAAGG CAGCCCGGAA CAGGCCGCAC TGGTTCGCCA GGCGATCCAG
AAAGGTGGTC TGGAAGATCT GGAAAGCATC CGCAATGCAG TGGAAAGCGC CGGTGCCCTC
GATTACACCG CACAGCTGGC CCGCGACTAC GCGGCCCGCG CCATTGCCTG CCTGGACGCG
CTGCCGCCCA GCGAGTACCG CGACGCACTG GTCGAACTGA GCGAGTTTGC GGTCGCCCGC
ACGCACTGA
 
Protein sequence
MQPQAFYRAV ADDFSAVDLI IKKQLTSRVP LVSKIGDYIT SAGGKRLRPL LVLLCGKALG 
REGDDVRLLA ATIEFLHTAT LLHDDVVDMS GMRRGRSTAN ALWGNAPSVL VGDFLYSRSF
EMMVELGSME VMKILSKATR IIAEGEVLQL SKIRDASTTE ETYMEVIRGK TAMLFEASTH
SAAALCNAPQ EQSEALRTFG DHLGVAFQLV DDLLDYRGDA ETLGKNVGDD LAEGKPTLPL
IYTMREGSPE QAALVRQAIQ KGGLEDLESI RNAVESAGAL DYTAQLARDY AARAIACLDA
LPPSEYRDAL VELSEFAVAR TH