Gene Psyr_0597 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0597 
Symbol 
ID3366075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp685704 
End bp686840 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content59% 
IMG OID637650939 
Productextracellular ligand-binding receptor 
Protein accessionYP_233705 
Protein GI66043864 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.577839 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCATA CGTTTTACAG GAAAGGTTTT CTGGCAATCG CAGTGGCTAC TGCATTGGGC 
GTGTCTTCGT TTGCACAGGC GGACGTGAAA ATCGGCGTAG CGGGCCCGAT GACCGGCGCG
AACGCGTCGT TTGGTCAGCA GTACATGAAG GGCGCGCAGG CAGCAGCCGA TGCGATCAAT
GCGGCAGGTG GTGTCAACGG GGAGAAAATC GTACTGATCG CAGGCGATGA CGCTTGTGAG
CCCAAGCAGG CCGTGGCAGT TGCCAACCGC CTGGTGGATC AGGACAAGGT GATTGGCGTG
GTCGGGCACT TCTGTTCATC GTCAACCATC CCGGCGTCTG AGATCTATGA CGAAGCAGGC
GTGATTGCCA TTACGCCCGG CTCGACCAAC CCGACAGTGA CCGAGCGTGG TCTGAAAGAT
ATGTTCCGCA TGTGCGGTCG CGATGACCAG CAGGGTGTCG TTGCGGGGGA CTACATCGTC
GACGTGCTCA AGGGCAAGAA AGTCGCCGTT ATCAATGACA AGGACACCTA CGGCAAGGGC
CTCGCGGACG CAACGGCCGC TCAGTTGACC AAGCGTGGCG TCGAGCCGAT CCTCGAAGAG
GGTCTGACCC GTGGCGAGAA AGATTTCAGT GCGCTGGTCA CGAAGATTCG TTCGGTAGAC
GCTGACGTCG TGTACTTCGG CGGTCTGCAC CCGGAAGCCG GTCCTTTGGT TCGGCAGATG
CGCGAGCAGG GCCTCAAGGA CGTCAAGTTC ATGTCCGATG ATGGCGTCGT GACCGACGAG
CTGGTCACCA CTGCAGGTGG CGCACAGTAC GTCGATGGCG TGTACATGAC CTTCGGCGCG
GACCCGCGTG CATTGCCGGA CAGCAAGGCT GTGGTGGATC AGTTCCGCAA GGCCGGTTAC
GAGCCTGAAG GTTACACCCT CTACGCCTAC GCTTCGGTAC AGGCCCTGGC GGCCGGTTTC
AATGGTGCCA AGTCCAACAA GGGTGACGCA GCCGCCACGT GGCTCAAGGC CAACCCGGTC
AAGACCGTCA TGGGTGAAAA AGCCTGGGAT GCCAAGGGTG ACCTGAAAGT CTCCGACTAT
GTGGTTTATC AGTGGGACGC CGCCGGCAAA TACAAGCAAC TCGAAAAACA GAAGTGA
 
Protein sequence
MSHTFYRKGF LAIAVATALG VSSFAQADVK IGVAGPMTGA NASFGQQYMK GAQAAADAIN 
AAGGVNGEKI VLIAGDDACE PKQAVAVANR LVDQDKVIGV VGHFCSSSTI PASEIYDEAG
VIAITPGSTN PTVTERGLKD MFRMCGRDDQ QGVVAGDYIV DVLKGKKVAV INDKDTYGKG
LADATAAQLT KRGVEPILEE GLTRGEKDFS ALVTKIRSVD ADVVYFGGLH PEAGPLVRQM
REQGLKDVKF MSDDGVVTDE LVTTAGGAQY VDGVYMTFGA DPRALPDSKA VVDQFRKAGY
EPEGYTLYAY ASVQALAAGF NGAKSNKGDA AATWLKANPV KTVMGEKAWD AKGDLKVSDY
VVYQWDAAGK YKQLEKQK