Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0543 |
Symbol | |
ID | 3366019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 613307 |
End bp | 614746 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637650883 |
Product | Type I secretion outer membrane protein, TolC |
Protein accession | YP_233651 |
Protein GI | 66043810 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.991736 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGCGCA AACTTTCGTT GGTCGTGGCT GTTTCGTTTG CGTCCAGCGG GTTGACCTGG GCAGCCGAAT TGCCGATGCC AACGCAGACA GGGCTGTTGA GCGTTTATCA GCAGGCCGTG GACAACAACG CCGACCTCGC GGCCTCGCGC GCCGATTACG ATGCGCGCAA GGAAGCCGTG CCGCAGGCCC GCGCCGGTTT GCTGCCGAAC ATTTCCGGCA GCGCCCAGAA CAGCAGCACC CGCACCAGCA TCGATCAGCC CAGAGCCGTG GCCAGCCGCA GCGGCAACCT CTACCAGGCC ACGCTGAGCC AGCCGATCTT CCGCGCCGAC CGCTGGTTCC AGTTGCAGGC TGCCGAAGCG AGCAACGAAC AGGCGGCACT GGAGCTGTCG GCTACCGAGC AGAATCTGAT CCTGCAATCG GCACAGAGCT ATTTCAGCGT ACTGCGTGCA CAGGACAACC TGGCTTCGAC CAAGGCCGAG GAAGCGGCCT TCAAGCGCCA GCTGGATCAG GCCAACGAGC GCTTCGATGT CGGCCTGTCG GACAAGACCG ATGTGCTGCA GGCGCAGGCC AGCTATGACA CGTCACGCGC CAGCCGACTC ATTGCCCAAC GTCAGGTCGA GGATGCCTTT CAGGCGCTGG TGACGCTGAC CAACCGCGAA TACAACTCGA TCGAAGGCAT CGTGCATACC CTGCCGGTGC TGGCGCCGAC GCCCAACGAT GCCAAGGCCT GGGTCGATAC TGCCGCGCAG CAGAACCTCA ACCTGCTGGC CAGCAACTAC GCGGTCAATG CCGCCGAAGA AACCCTGCGC CAGCGCAAGG CCGGACACGC GCCGACGCTC GATGCCGTGG CGACCTATCA GCGTGGCGAT AACGATGCAC TGGGTTTCAG CAACCCCAAC TACACCGGTC GCAATTACGG CGGCGACGTC GAGCAGCGCA GCATTGGCGT GCAGTTGAAC ATCCCGATCT ACAGCGGCGG CCTGACCAGC TCGCAGGTAC GCGAAGCCTA TGCGCGCCTG AGCCAGAGCG AGCAGCGGCG TGAAAGCCTG CGTCGTCAGG TGGTGGAAAA CACCCGCAAC CTGCATCGCG CGGTGAATAC CGACGTGGAG CAGGTCCAGG CCCGCAAGCA GTCGATCATT TCCAACCAGA GCGCGCTGGA AGCCACAGAA ATCGGTTATC AGGTCGGCAC CCGCAACATC GTCGACGTGC TGGATGCGCA ACGCCAGCTG TATGCCTCGG TGCGTGACTA CAACAACACG CGTTACGACT ACATCCTCGA CAACCTGCGC CTCAAGCAGG CAGCAGGCAC TCTGAACCCG GGCGACCTGC AGGACCTGTC GCGCTACCTG AAGGCCGACT ACAACCCGGA CAAGGACTTC CTGCCGCCGG ACCTGGCGAC TGCTGCGCAG AAGAACTTCG AACGGCCTGC AAAGCGCTGA
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Protein sequence | MLRKLSLVVA VSFASSGLTW AAELPMPTQT GLLSVYQQAV DNNADLAASR ADYDARKEAV PQARAGLLPN ISGSAQNSST RTSIDQPRAV ASRSGNLYQA TLSQPIFRAD RWFQLQAAEA SNEQAALELS ATEQNLILQS AQSYFSVLRA QDNLASTKAE EAAFKRQLDQ ANERFDVGLS DKTDVLQAQA SYDTSRASRL IAQRQVEDAF QALVTLTNRE YNSIEGIVHT LPVLAPTPND AKAWVDTAAQ QNLNLLASNY AVNAAEETLR QRKAGHAPTL DAVATYQRGD NDALGFSNPN YTGRNYGGDV EQRSIGVQLN IPIYSGGLTS SQVREAYARL SQSEQRRESL RRQVVENTRN LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YASVRDYNNT RYDYILDNLR LKQAAGTLNP GDLQDLSRYL KADYNPDKDF LPPDLATAAQ KNFERPAKR
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