Gene Psyr_0543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0543 
Symbol 
ID3366019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp613307 
End bp614746 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content63% 
IMG OID637650883 
ProductType I secretion outer membrane protein, TolC 
Protein accessionYP_233651 
Protein GI66043810 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.991736 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGCGCA AACTTTCGTT GGTCGTGGCT GTTTCGTTTG CGTCCAGCGG GTTGACCTGG 
GCAGCCGAAT TGCCGATGCC AACGCAGACA GGGCTGTTGA GCGTTTATCA GCAGGCCGTG
GACAACAACG CCGACCTCGC GGCCTCGCGC GCCGATTACG ATGCGCGCAA GGAAGCCGTG
CCGCAGGCCC GCGCCGGTTT GCTGCCGAAC ATTTCCGGCA GCGCCCAGAA CAGCAGCACC
CGCACCAGCA TCGATCAGCC CAGAGCCGTG GCCAGCCGCA GCGGCAACCT CTACCAGGCC
ACGCTGAGCC AGCCGATCTT CCGCGCCGAC CGCTGGTTCC AGTTGCAGGC TGCCGAAGCG
AGCAACGAAC AGGCGGCACT GGAGCTGTCG GCTACCGAGC AGAATCTGAT CCTGCAATCG
GCACAGAGCT ATTTCAGCGT ACTGCGTGCA CAGGACAACC TGGCTTCGAC CAAGGCCGAG
GAAGCGGCCT TCAAGCGCCA GCTGGATCAG GCCAACGAGC GCTTCGATGT CGGCCTGTCG
GACAAGACCG ATGTGCTGCA GGCGCAGGCC AGCTATGACA CGTCACGCGC CAGCCGACTC
ATTGCCCAAC GTCAGGTCGA GGATGCCTTT CAGGCGCTGG TGACGCTGAC CAACCGCGAA
TACAACTCGA TCGAAGGCAT CGTGCATACC CTGCCGGTGC TGGCGCCGAC GCCCAACGAT
GCCAAGGCCT GGGTCGATAC TGCCGCGCAG CAGAACCTCA ACCTGCTGGC CAGCAACTAC
GCGGTCAATG CCGCCGAAGA AACCCTGCGC CAGCGCAAGG CCGGACACGC GCCGACGCTC
GATGCCGTGG CGACCTATCA GCGTGGCGAT AACGATGCAC TGGGTTTCAG CAACCCCAAC
TACACCGGTC GCAATTACGG CGGCGACGTC GAGCAGCGCA GCATTGGCGT GCAGTTGAAC
ATCCCGATCT ACAGCGGCGG CCTGACCAGC TCGCAGGTAC GCGAAGCCTA TGCGCGCCTG
AGCCAGAGCG AGCAGCGGCG TGAAAGCCTG CGTCGTCAGG TGGTGGAAAA CACCCGCAAC
CTGCATCGCG CGGTGAATAC CGACGTGGAG CAGGTCCAGG CCCGCAAGCA GTCGATCATT
TCCAACCAGA GCGCGCTGGA AGCCACAGAA ATCGGTTATC AGGTCGGCAC CCGCAACATC
GTCGACGTGC TGGATGCGCA ACGCCAGCTG TATGCCTCGG TGCGTGACTA CAACAACACG
CGTTACGACT ACATCCTCGA CAACCTGCGC CTCAAGCAGG CAGCAGGCAC TCTGAACCCG
GGCGACCTGC AGGACCTGTC GCGCTACCTG AAGGCCGACT ACAACCCGGA CAAGGACTTC
CTGCCGCCGG ACCTGGCGAC TGCTGCGCAG AAGAACTTCG AACGGCCTGC AAAGCGCTGA
 
Protein sequence
MLRKLSLVVA VSFASSGLTW AAELPMPTQT GLLSVYQQAV DNNADLAASR ADYDARKEAV 
PQARAGLLPN ISGSAQNSST RTSIDQPRAV ASRSGNLYQA TLSQPIFRAD RWFQLQAAEA
SNEQAALELS ATEQNLILQS AQSYFSVLRA QDNLASTKAE EAAFKRQLDQ ANERFDVGLS
DKTDVLQAQA SYDTSRASRL IAQRQVEDAF QALVTLTNRE YNSIEGIVHT LPVLAPTPND
AKAWVDTAAQ QNLNLLASNY AVNAAEETLR QRKAGHAPTL DAVATYQRGD NDALGFSNPN
YTGRNYGGDV EQRSIGVQLN IPIYSGGLTS SQVREAYARL SQSEQRRESL RRQVVENTRN
LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YASVRDYNNT
RYDYILDNLR LKQAAGTLNP GDLQDLSRYL KADYNPDKDF LPPDLATAAQ KNFERPAKR