| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0478 |
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| Symbol | |
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| ID | 3365954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 516463 |
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| End bp | 517497 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637650818 |
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| Product | pilus retraction protein PilT |
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| Protein accession | YP_233586 |
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| Protein GI | 66043745 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATTA CCGAGCTGTT GGCCTTCAGT GCCAAACAGG GCGCGTCGGA CTTGCACCTC
TCTGCAGGTC TGCCGCCGAT GATCCGCGTC GACGGCGATG TGCGGCGTAT CAACCTGCCC
CCGCTGGACG CGAAGGAGGT CAAGGCGCTG ATCTACGACA TCATGAACGA CAAGCAACGG
CAGGATTTCG AAGAGCGGCT GGAAACCGAC TTTTCCTTTG AAGTGCCGGG CGTGGCGCGG
TTTCGGGTCA ACGCCTTCAA CCAGAACCGC GGTGCTGGCG CGGTATTCCG GACCATTCCC
TCGAAAATCC TGAGCATGGA AGACTTGGGC ATGGGCAATG TGTTTCGCAA GATTACCGAC
GTGGCGCGCG GCCTGATTCT GGTTACCGGG CCGACCGGCT CAGGCAAGTC GACCACCCTG
GCGGCAATGA TCGACTACCT CAATAACAAT AAGCATCACC ATATTCTGAC CATCGAGGAC
CCGATCGAAT TCGTCCACGA GTCGAAGAAG TGCCTGGTCA ACCAGCGTGA GGTTCACCGC
GACACGCTGG GCTTCTCGGA GGCGCTGCGC TCGGCGTTGC GTGAAGACCC GGACGTGATT
CTGGTCGGTG AAATGCGTGA CCTGGAGACC ATCCGCCTGG CGCTGACCGC TGCTGAAACC
GGCCACCTGG TATTCGGCAC GCTGCACACC ACGTCAGCCG CCAAGACCAT CGACCGGATC
GTCGACGTGT TTCCGGCTCA GGAAAAATCG ATGATTCGCT CGATGCTCTC CGAATCGCTG
CACGCCGTGG TCTCGCAGGC GTTGCTCAAG AAGGTCGGCG GCGGGCGCGT GGCGGCGCAC
GAAATCATGA TGGGCACCCC GGCGATCCGT AACCTGATCC GCGAGGACAA AGTGGCGCAG
ATGTATTCGT CGATCCAGAC GGGTGGCTCG ATGGGCATGC AGACGCTGGA CATGTGCCTG
GCCGATCTGG TCAAGAAGGG GCTGATCACC CGCGAAAGCG CACGCGAACG CGCCAAGGTG
CCGGATAACT TCTGA
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| Protein sequence | MDITELLAFS AKQGASDLHL SAGLPPMIRV DGDVRRINLP PLDAKEVKAL IYDIMNDKQR
QDFEERLETD FSFEVPGVAR FRVNAFNQNR GAGAVFRTIP SKILSMEDLG MGNVFRKITD
VARGLILVTG PTGSGKSTTL AAMIDYLNNN KHHHILTIED PIEFVHESKK CLVNQREVHR
DTLGFSEALR SALREDPDVI LVGEMRDLET IRLALTAAET GHLVFGTLHT TSAAKTIDRI
VDVFPAQEKS MIRSMLSESL HAVVSQALLK KVGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSSIQTGGS MGMQTLDMCL ADLVKKGLIT RESARERAKV PDNF
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