Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_0407 |
Symbol | |
ID | 3365883 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 436404 |
End bp | 438560 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637650747 |
Product | type II and III secretion system protein:NolW-like:NolW-like |
Protein accession | YP_233515 |
Protein GI | 66043674 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTGGG CAAGGCCAAG TATGCACAGT AGCGCTCAAC GGAAATTGAT CATGACCCGG ATTCTCTCGA TTATCGGCGT GTCGTTATGC ATCGCGATGC TGTCGCCGGT TCTCCAGGCT GCCAACCTCA AGACCCTGGA TGTCGCCGCC CTGCCGGGTG ACCGCATCGA GCTGAAGCTG GCATTCGACG CCCCGGTGCC TGCACCGCGC GGTTACACCA CCTCGCAACC GGCGCGCATT GCGCTGGACC TGCCGGGTGT TACCAGCCAG CTGGCGACCA AAAGTCGTGA CCTGGGCACC GGCAATGCGC GCAGTGTGGT CGTGGTACAG GCTCAGGACC GTACCCGGGT GATCATCAAC CTGACCACGC TTTCGCCGTA CAGCTCCCGC GTCGATGGCA ACAACCTGTT CGTGGTCATC GGCCAGGGTG CCGGCGCCGC GCAAGCCTCC CAGCCGACTA CCGCGATGGG CGCGCAACGG GTCGCGGTGC CACCGCCCAC ACCGGCATCC GCCAAGCCGT TCATCCCCGC TGGCGTCAAG GCCATCAGGA ATGTCGACTT TCAGCGTGGC GAGCTGGGTG AAGGCAATGT GGTCATTGAC CTGAGCAACC CCAGCATTGC CCCGGATATT CAGGAGCAGG GCGGCAAGAT CCGCGTGGAC TTCGCCAAGA CCCAGCTGCC CGAACCGCTG CGCGTCCGCC TGGACGTCAA GGACTTCGCC ACGCCGGTGC AGTTCGTCAG TGCTTCGGCG ACAGGTGACA AGGCCAGCAT TCTGATCGAG CCGTCGGGCG CCTTCGACTA CTCGGCGTTC CAGACCGAAA ACAAGCTGAC GATCAGCGTG CGCCCGTTGA CCAACGAGGA TCTGGACCGC CGCGCTGCCG ACAAGCCGGT GTACACCGGT GAAAAGCTGT CGCTGAACTT CCAGGACATC GATGTGCGTT CGGTGCTGCA GCTGATTGCC GACTTCACCA ACCTCAATCT GGTGGCCAGT GATACGGTCC AGGGCGGTAT CACCCTGCGT CTGCAGAATG TGCCATGGGA TCAGGCGCTG GATCTGGTGC TGAAAACCAA GGGCCTGGAC AAGCGCAAGG TTGGCAACGT TCTGCTGGTC GCACCAGCCG ATGAAATTGC CGCCCGTGAG CGTCAGGAGC TGGAATCGCT CAAACAGATC GCCGAGCTGG CGCCCCTGCG CCGCGAACTG CTGCAGGTCA ATTACGCCAA GGCAGCCGAC ATCGCCAAGC TGTTCCAGTC CGTGACCAGC GCCGAGTCCA AGGCCGACGA GCGCGGCTCG ATCACGGTGG ACGACCGGAC CAACAACATC ATTGCCTACC AGACCCAGGA ACGACTCGAC GAACTGCGTC GTATCGTGTC GCAACTGGAC ATCCCGGTAC GCCAGGTGAT GATCGAGGCG CGCATCGTCG AGGCCAACGT CGATTACAAC AAGCAGCTCG GGGTACGCTG GGGCGGGTCT ACCAACACCA GCGGCAGCGG AAAATGGACA ACCTACGGGC TTGACAATAA TGGCGACGAG GCCGGTAACA CCAGCGGCAA CCTGACCCCC AACGTGCCGT TCGTGGACCT CGGCGCAGCC GGCGCTACCT CGGGTATCGG CCTTGGCTTC GTGACCAACA ACACGCTGCT GGACCTTGAG CTGAGTGCCA TGGAGAAAAC CGGTAACGGT GAAATCGTCT CCCAGCCCAA GGTGGTGACC TCCGACAAGG AAACCGCCAA GATCCTCAAG GGCACGGAGA TCCCGTATCA GGAATCCAGC TCCAGCGGTG CGACCACCGT GAGCTTCAAG GAAGCTTCCC TGTCGCTTGA AGTGACGCCG CAGATCACGC CGGACAACCG CATCATCATG GAAGTGAAGG TCACCAAGGA CGAGCCGGAC TACCTGAATG CGGTACTGGG CGTACCGCCC ATCAAGAAGA ACGAGGTCAA CGCCAAGGTG CTGATTTCCG ACGGCGAAAC CATCGTCATC GGTGGTGTGT TCTCGAATAC GCAAAGTAAA GTTGTCGATA AAGTGCCATT TCTTGGCGAT GTACCGTATC TTGGCCGGCT TTTCAGGCGC GATGTGGTAT CCGAGTCCAA ATCCGAGCTG TTGGTATTTT TGACTCCGCG TATCATGAAC AACCAGGCGA TTTCTGTGAG TCGTTGA
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Protein sequence | MKWARPSMHS SAQRKLIMTR ILSIIGVSLC IAMLSPVLQA ANLKTLDVAA LPGDRIELKL AFDAPVPAPR GYTTSQPARI ALDLPGVTSQ LATKSRDLGT GNARSVVVVQ AQDRTRVIIN LTTLSPYSSR VDGNNLFVVI GQGAGAAQAS QPTTAMGAQR VAVPPPTPAS AKPFIPAGVK AIRNVDFQRG ELGEGNVVID LSNPSIAPDI QEQGGKIRVD FAKTQLPEPL RVRLDVKDFA TPVQFVSASA TGDKASILIE PSGAFDYSAF QTENKLTISV RPLTNEDLDR RAADKPVYTG EKLSLNFQDI DVRSVLQLIA DFTNLNLVAS DTVQGGITLR LQNVPWDQAL DLVLKTKGLD KRKVGNVLLV APADEIAARE RQELESLKQI AELAPLRREL LQVNYAKAAD IAKLFQSVTS AESKADERGS ITVDDRTNNI IAYQTQERLD ELRRIVSQLD IPVRQVMIEA RIVEANVDYN KQLGVRWGGS TNTSGSGKWT TYGLDNNGDE AGNTSGNLTP NVPFVDLGAA GATSGIGLGF VTNNTLLDLE LSAMEKTGNG EIVSQPKVVT SDKETAKILK GTEIPYQESS SSGATTVSFK EASLSLEVTP QITPDNRIIM EVKVTKDEPD YLNAVLGVPP IKKNEVNAKV LISDGETIVI GGVFSNTQSK VVDKVPFLGD VPYLGRLFRR DVVSESKSEL LVFLTPRIMN NQAISVSR
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