Gene Psyr_0407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0407 
Symbol 
ID3365883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp436404 
End bp438560 
Gene Length2157 bp 
Protein Length718 aa 
Translation table11 
GC content61% 
IMG OID637650747 
Producttype II and III secretion system protein:NolW-like:NolW-like 
Protein accessionYP_233515 
Protein GI66043674 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTGGG CAAGGCCAAG TATGCACAGT AGCGCTCAAC GGAAATTGAT CATGACCCGG 
ATTCTCTCGA TTATCGGCGT GTCGTTATGC ATCGCGATGC TGTCGCCGGT TCTCCAGGCT
GCCAACCTCA AGACCCTGGA TGTCGCCGCC CTGCCGGGTG ACCGCATCGA GCTGAAGCTG
GCATTCGACG CCCCGGTGCC TGCACCGCGC GGTTACACCA CCTCGCAACC GGCGCGCATT
GCGCTGGACC TGCCGGGTGT TACCAGCCAG CTGGCGACCA AAAGTCGTGA CCTGGGCACC
GGCAATGCGC GCAGTGTGGT CGTGGTACAG GCTCAGGACC GTACCCGGGT GATCATCAAC
CTGACCACGC TTTCGCCGTA CAGCTCCCGC GTCGATGGCA ACAACCTGTT CGTGGTCATC
GGCCAGGGTG CCGGCGCCGC GCAAGCCTCC CAGCCGACTA CCGCGATGGG CGCGCAACGG
GTCGCGGTGC CACCGCCCAC ACCGGCATCC GCCAAGCCGT TCATCCCCGC TGGCGTCAAG
GCCATCAGGA ATGTCGACTT TCAGCGTGGC GAGCTGGGTG AAGGCAATGT GGTCATTGAC
CTGAGCAACC CCAGCATTGC CCCGGATATT CAGGAGCAGG GCGGCAAGAT CCGCGTGGAC
TTCGCCAAGA CCCAGCTGCC CGAACCGCTG CGCGTCCGCC TGGACGTCAA GGACTTCGCC
ACGCCGGTGC AGTTCGTCAG TGCTTCGGCG ACAGGTGACA AGGCCAGCAT TCTGATCGAG
CCGTCGGGCG CCTTCGACTA CTCGGCGTTC CAGACCGAAA ACAAGCTGAC GATCAGCGTG
CGCCCGTTGA CCAACGAGGA TCTGGACCGC CGCGCTGCCG ACAAGCCGGT GTACACCGGT
GAAAAGCTGT CGCTGAACTT CCAGGACATC GATGTGCGTT CGGTGCTGCA GCTGATTGCC
GACTTCACCA ACCTCAATCT GGTGGCCAGT GATACGGTCC AGGGCGGTAT CACCCTGCGT
CTGCAGAATG TGCCATGGGA TCAGGCGCTG GATCTGGTGC TGAAAACCAA GGGCCTGGAC
AAGCGCAAGG TTGGCAACGT TCTGCTGGTC GCACCAGCCG ATGAAATTGC CGCCCGTGAG
CGTCAGGAGC TGGAATCGCT CAAACAGATC GCCGAGCTGG CGCCCCTGCG CCGCGAACTG
CTGCAGGTCA ATTACGCCAA GGCAGCCGAC ATCGCCAAGC TGTTCCAGTC CGTGACCAGC
GCCGAGTCCA AGGCCGACGA GCGCGGCTCG ATCACGGTGG ACGACCGGAC CAACAACATC
ATTGCCTACC AGACCCAGGA ACGACTCGAC GAACTGCGTC GTATCGTGTC GCAACTGGAC
ATCCCGGTAC GCCAGGTGAT GATCGAGGCG CGCATCGTCG AGGCCAACGT CGATTACAAC
AAGCAGCTCG GGGTACGCTG GGGCGGGTCT ACCAACACCA GCGGCAGCGG AAAATGGACA
ACCTACGGGC TTGACAATAA TGGCGACGAG GCCGGTAACA CCAGCGGCAA CCTGACCCCC
AACGTGCCGT TCGTGGACCT CGGCGCAGCC GGCGCTACCT CGGGTATCGG CCTTGGCTTC
GTGACCAACA ACACGCTGCT GGACCTTGAG CTGAGTGCCA TGGAGAAAAC CGGTAACGGT
GAAATCGTCT CCCAGCCCAA GGTGGTGACC TCCGACAAGG AAACCGCCAA GATCCTCAAG
GGCACGGAGA TCCCGTATCA GGAATCCAGC TCCAGCGGTG CGACCACCGT GAGCTTCAAG
GAAGCTTCCC TGTCGCTTGA AGTGACGCCG CAGATCACGC CGGACAACCG CATCATCATG
GAAGTGAAGG TCACCAAGGA CGAGCCGGAC TACCTGAATG CGGTACTGGG CGTACCGCCC
ATCAAGAAGA ACGAGGTCAA CGCCAAGGTG CTGATTTCCG ACGGCGAAAC CATCGTCATC
GGTGGTGTGT TCTCGAATAC GCAAAGTAAA GTTGTCGATA AAGTGCCATT TCTTGGCGAT
GTACCGTATC TTGGCCGGCT TTTCAGGCGC GATGTGGTAT CCGAGTCCAA ATCCGAGCTG
TTGGTATTTT TGACTCCGCG TATCATGAAC AACCAGGCGA TTTCTGTGAG TCGTTGA
 
Protein sequence
MKWARPSMHS SAQRKLIMTR ILSIIGVSLC IAMLSPVLQA ANLKTLDVAA LPGDRIELKL 
AFDAPVPAPR GYTTSQPARI ALDLPGVTSQ LATKSRDLGT GNARSVVVVQ AQDRTRVIIN
LTTLSPYSSR VDGNNLFVVI GQGAGAAQAS QPTTAMGAQR VAVPPPTPAS AKPFIPAGVK
AIRNVDFQRG ELGEGNVVID LSNPSIAPDI QEQGGKIRVD FAKTQLPEPL RVRLDVKDFA
TPVQFVSASA TGDKASILIE PSGAFDYSAF QTENKLTISV RPLTNEDLDR RAADKPVYTG
EKLSLNFQDI DVRSVLQLIA DFTNLNLVAS DTVQGGITLR LQNVPWDQAL DLVLKTKGLD
KRKVGNVLLV APADEIAARE RQELESLKQI AELAPLRREL LQVNYAKAAD IAKLFQSVTS
AESKADERGS ITVDDRTNNI IAYQTQERLD ELRRIVSQLD IPVRQVMIEA RIVEANVDYN
KQLGVRWGGS TNTSGSGKWT TYGLDNNGDE AGNTSGNLTP NVPFVDLGAA GATSGIGLGF
VTNNTLLDLE LSAMEKTGNG EIVSQPKVVT SDKETAKILK GTEIPYQESS SSGATTVSFK
EASLSLEVTP QITPDNRIIM EVKVTKDEPD YLNAVLGVPP IKKNEVNAKV LISDGETIVI
GGVFSNTQSK VVDKVPFLGD VPYLGRLFRR DVVSESKSEL LVFLTPRIMN NQAISVSR