Gene Psyr_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0398 
Symbol 
ID3365874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp425511 
End bp427730 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content65% 
IMG OID637650738 
Productprimosome assembly protein PriA 
Protein accessionYP_233506 
Protein GI66043665 
COG category[L] Replication, recombination and repair 
COG ID[COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase 
TIGRFAM ID[TIGR00595] primosomal protein N' 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.844316 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCGACG CCATCCTGCG CCTTGCCCTG CCCTCGCCGC TTCGCCGCCT GTTCGACTAC 
CGCGCCCCCG CGGGCGTGTC GCGCAGCGCC TTGCAGCCGG GCATGCGTCT GCGAGTGCCG
TTCGGACGTC GGGAAATGAT CGGCATTCTG GTGGAAGTGG TCGATCACAG CGAAGTACCC
GCCGACAAGC TGAAGCCGGC TATCGCCCTG CTCGACAGTG AAGCGCCGCT GCCGCCCGCA
CTGTTCAAGC TGTGCCTGTG GACCTCGCAG TACTACCAGC ACAGCCTCGG AGACACACTG
AGCTGGGCCT TGCCGGTGCT GCTGCGTCAG GGCGAACTGG CCGAAAGTCG CCAAGAGCGC
TTCTGGCATG TGGCCCCGGG CGCCAGCGTC GACGATCCGC GCATCGCCCG CGCGCCCAAG
CAGCGCGAAG CCCTGACCAC CCTTGCCCAG CACCCGCACG GAGTGGCGCA TCAACTGCTC
AGCAAGCTGA TGCTTAACAG GGACAGCCTC AACCTGTTGC TGGCCAAGGA GCTGGTGTAC
GTCGAGGTCC GCAGCCATGC GCCCAGCGCA CGCCATGAAC ACTGGCTGGC CCAGCCTGAA
TTGCCACTCA ACACCGAACA ACGCGCCGCT TACGAAGCGA TCCGCGCCGG ATTCGACAGC
TTTCATGCGT TTCTGCTGGC CGGTGTCACC GGCAGCGGCA AGACCGAAGT CTATCTGCAA
CTGATCCGCG AAACCCTCGA AGCCGGCAAG CAGGCGCTGG TGCTGATCCC GGAAATCAAC
CTCGGCCCGC AGACCCTGGC GCGCTTCGAG CAACGCTTCA ATGCGCGCAT TGCGCTGATC
CACTCGGCGG TCAACGACCG CGAACGGCTG GACGCCTGGC TGGCGGCTCG CGATGGCGAG
GCGGACATCA TCATCGGCAC GCGTTCGGCG CTGTTCACGC CGATGAAAAA CCCCGGCCTG
ATCATCATCG ACGAAGAACA CGACGGTTCC TATAAACAGC AGGAAGGTCT GCGCTATCAC
GCCCGCGATC TGGCACTGGT GCGGGCGCGT CAGGAAAACA TTCCGATTGT CCTGGGCTCG
GCCACGCCGT CCCTGGAAAG CCTGCACAAC GCCTACACCG GCCGCTATGG CCTGTTGCGC
CTGAATCAGC GCGCGGGCGG CGCACAACAG CCGCGTTTCA TGCGCCTGGA CGTCAAGAGC
CGACCGCTGG ACAGCGGCAT CTCCGGGCCC ATGCAGCAGG CCATCGGCCA GACGCTCGCG
GCAGGCCAGC AGGTCTTGGT GTTCCTCAAC CGTCGCGGCT TTGCGCCAAC CTTGCTGTGC
CACGACTGCG GCTGGATGTC CGGCTGCCAA CGCTGCGATG CACGCATGAC CGTGCACCAG
CGCTCGGGCG AACTGCGCTG CCATCACTGC GGGTATGTCG AGCGCGTACC GCGGCAGTGC
CCGTCGTGCG GCAAGGTGGA TTTGCGCCCG GTAGGCGCCG GCACCGAGCG CGCCGAAGAA
CGCCTGGCGA TTCTGTTTCC GGACTACCCC GTGCTGCGTG TCGATCGCGA CAGCACGTCG
CGCAAGGACG CCATGAACCA GCTGTTCACG ACGATCCAGC GCGGTCAGCC GTGCATTCTG
GTCGGCACGC AAATGCTCGC CAAGGGCCAT CACTTTCCCC GGGTCACCCT GGTCTCGATT
CTGGACGCCG ACGGCGGGCT GTTTTCCGGC GACTTCCGCG CCAGCGAGCG CATGGCGCAA
CTGATCGTGC AGGTGGCAGG CCGTGCCGGG CGCGCCGAAG AGCCTGGCAA GGTGATCATC
CAGACCCACC TGGCCGACCA TCCGTTGCTG ATCCAGCTGA CCGAGCAGGG TTATTTCGCC
TTTGCCGAAC AAGCCTTGAG CGAGCGCCGT TCAGCGAGTC TGCCACCGTT TTCACACCTT
GCACTGCTGC GCGCCGAAGC GCACAAGCCG GGACAGGCCG AGACCTTTCT CGATCAGGCC
TGCAGCGATG CCGAGCAACT GGTTGCGCAA ATGGCGCTGG GCGGCATAGA GCTGCTGGGC
CCGGTTCCGG CCCCGATGGA ACGCCGCGCC GGCCGTTATC GCGCGCAACT GCTGGTGCAG
TCCAGCGCCC GCGCGCCACT GCATAAATTG CTTGCCACCT GGCTGCTCGC ACTGGAGCAA
ATGCCCAGCG GTCGACAGGT CAGATGGTCG CTGGATGTGG ATCCCGTGGA TCTTTATTAA
 
Protein sequence
MPDAILRLAL PSPLRRLFDY RAPAGVSRSA LQPGMRLRVP FGRREMIGIL VEVVDHSEVP 
ADKLKPAIAL LDSEAPLPPA LFKLCLWTSQ YYQHSLGDTL SWALPVLLRQ GELAESRQER
FWHVAPGASV DDPRIARAPK QREALTTLAQ HPHGVAHQLL SKLMLNRDSL NLLLAKELVY
VEVRSHAPSA RHEHWLAQPE LPLNTEQRAA YEAIRAGFDS FHAFLLAGVT GSGKTEVYLQ
LIRETLEAGK QALVLIPEIN LGPQTLARFE QRFNARIALI HSAVNDRERL DAWLAARDGE
ADIIIGTRSA LFTPMKNPGL IIIDEEHDGS YKQQEGLRYH ARDLALVRAR QENIPIVLGS
ATPSLESLHN AYTGRYGLLR LNQRAGGAQQ PRFMRLDVKS RPLDSGISGP MQQAIGQTLA
AGQQVLVFLN RRGFAPTLLC HDCGWMSGCQ RCDARMTVHQ RSGELRCHHC GYVERVPRQC
PSCGKVDLRP VGAGTERAEE RLAILFPDYP VLRVDRDSTS RKDAMNQLFT TIQRGQPCIL
VGTQMLAKGH HFPRVTLVSI LDADGGLFSG DFRASERMAQ LIVQVAGRAG RAEEPGKVII
QTHLADHPLL IQLTEQGYFA FAEQALSERR SASLPPFSHL ALLRAEAHKP GQAETFLDQA
CSDAEQLVAQ MALGGIELLG PVPAPMERRA GRYRAQLLVQ SSARAPLHKL LATWLLALEQ
MPSGRQVRWS LDVDPVDLY