Gene Psyr_0089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0089 
Symbol 
ID3365564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp96943 
End bp98331 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content64% 
IMG OID637650432 
Productresponse regulator receiver 
Protein accessionYP_233201 
Protein GI66043360 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG1639] Predicted signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.62061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACCG CTGTAGTTTT GCCCGCCGTT CCTCGCGTAC TGATAGCCGA GTCTGATCCG 
TGGGTTCGCG AGACGCTTAG CGACCTGGTG CTGGGCGTGC GTGCGGATAT CGAGCTGGAG
ATGTGCACCG ATGGCAAACA GGCCGTCGAG TGGATGAAAA AACACCTGCC GGACCTGATC
ATCGCCGCCC GCGAACTGCC GGGGATCGAT GGCCTGAGCC TGCTGCGCGG CGTGCGCAAT
CTGCGTCGTC AGCCCGCCAT CCCGTTCATT CTGATCAGTA ATCGCAATGA CAGCGCCAGC
GTGCGCGAGG TCGTGCCGCT GGCACCGACT GCCTACCTGA CCAAACCGCT GAACACCGAA
GGGCTGCGCC AGCGTCTTGA AGGCCTGCTG CTGGAACGCA GCGCCCCGGT TGCGGGTGCG
GTGCCCGCGC TGACGCCGGG TCTGACCCTG ACCAAGTTTC TCGACAAACG CCGCGACATC
GCCGATGGCG CGCCGCTGTT CGTCGATGTC GCCACGGCGG TGACGCTCAG CCAGACCGCC
AGCGGCATCG ACGCCGCCCT GCTGGAGCAG GAACTGCGCA ACGATCCGCA CATCACCGCC
GTACTGATCG CCGCCGCCAA CACGGCGGCG CAGCACCTGG GCAAGCCGAT TCAGACCATG
GGCGGGGCGC TGGCCATTCT CGGGCCAGTG CAGGTCGCCA ATATCGCGTC CGGTCTGGGC
AAAAAGCGTA TGGCGGTGCT GACCAACGAC GCGTTGCTGG CCAAGGCCCA TGAGCTGTGG
ACCCTGTCGC AGCGCACGGC TGATTACGCG CGCATCCTGG GCGGCATGCT GGAGCTGGAT
GCGGAGCGCT GTTTTAGCGC CGGACTGCTG CAGTCGCTGG GCGATCTGGC GGTATTGGGT
TGTCTGCAGG AGTGGCTGCT GGCTGGCGGC CAACTGGATG AGCAGGTGAT CGGGCAGTCT
CTGGAGCAGT ACTCCGCGGC CTTCGGTTCT GCTCTGCGCA CCCGCTGGCG TTTGCCGCTG
GAACTGCGTG AGCTGATCGC TGCGGTGTAT CAGTACAATA CCGGCATCTA CACACGCGAA
GTGCTGGCAA TGAACCTGGC GGGGCAGATG GCGCGCTTGG GCGAGGAAGA AAGTGTCACC
ACGCTGATCA AGACCAAGTC GGCCAAGCTG TTGAAGCTCA GCGTCGGTGA CTTGCAGCGC
CTGCGCAAGA AGCTGACAGG GGTGACGGAT CCGAGTTTGC TGAGGCCGCT GTCTAGCGAA
ACTGAGGTGG CTGCCGAGGC GGTCGACGAC GAGCCTGATC TGCTCGACCT GGCACCTGAG
GCACCTGCTG AAGCGCCTGC TGCGATCGAG GATCCGGCAG ACGCTGTTCA GGGTCCGCCC
GAAAAGTAA
 
Protein sequence
MMTAVVLPAV PRVLIAESDP WVRETLSDLV LGVRADIELE MCTDGKQAVE WMKKHLPDLI 
IAARELPGID GLSLLRGVRN LRRQPAIPFI LISNRNDSAS VREVVPLAPT AYLTKPLNTE
GLRQRLEGLL LERSAPVAGA VPALTPGLTL TKFLDKRRDI ADGAPLFVDV ATAVTLSQTA
SGIDAALLEQ ELRNDPHITA VLIAAANTAA QHLGKPIQTM GGALAILGPV QVANIASGLG
KKRMAVLTND ALLAKAHELW TLSQRTADYA RILGGMLELD AERCFSAGLL QSLGDLAVLG
CLQEWLLAGG QLDEQVIGQS LEQYSAAFGS ALRTRWRLPL ELRELIAAVY QYNTGIYTRE
VLAMNLAGQM ARLGEEESVT TLIKTKSAKL LKLSVGDLQR LRKKLTGVTD PSLLRPLSSE
TEVAAEAVDD EPDLLDLAPE APAEAPAAIE DPADAVQGPP EK