| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0074 |
|---|
| Symbol | |
|---|
| ID | 3365549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 77633 |
|---|
| End bp | 79297 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637650417 |
|---|
| Product | GGDEF |
|---|
| Protein accession | YP_233186 |
|---|
| Protein GI | 66043345 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCTACAC CTGTCGAACC CTTGCGATTG CTGCTTTTGG CGCACGAGCC CTTCTGGCAG
GCGCTGCTTA GCGGCTGCCT CACTGCGCCG GGAAGCAACG TGATACTTCT GCATGGCGCG
AACTGGGACG TTTTCAGCGC CCGCTACGCT AACGAGCGCA ACACCGTGCT GCTGACCACG
CCTGATCTGC AGCCCAGGAC CGGGGCCTGT CTGTTGCCTA CCGTGGTGCT GCTTGAGGCC
GAACCGCTGG TCGGGCCGAC CGGCGTCAGT GACTGGCTGG TGCGCGACGC CTTGACCGGC
GACACGCTTC GGCGCTGCCT GCGCTATGTC CACGAGCGCA GTCGCCTGGA AGACAGCCTG
CGACGTCTGG TCGGCCAGGA CCCGTTGACC GGCATCGCCA ACCGCCAGGG GTTTCAGGCG
CTGCTCTCGG CTCGCCTGAG CGAAGGCGGC AGCGTGGCGC TGGGGCATCT GGACCTGGAC
AATTTTCGCC GCGCCAACGA TTCACTGGGG CATCAGGCCG GTGATCGACT GATCCTGCAA
GTGGTGGCGC GCTTGAAAAA CCAGCTCGAT GCCGGTGATC AGATCGCCCG CCTGGGGGGC
GACGAATTCG CCTTGTTGAT CGACACCCGA ACAGCCCCCG AACGTGCCCT GCAGATGGCC
GAACGTATCA CCGACGTGCT GGCCGAACCC TATTGGGTCG ATGGCGAAAG CCTGTTGCTG
GGTTGCAGCC TGGGCATCGC TCACTCCCAG GCCCAGCCCG AAGCCGACCC GCTGATGTGG
CATGCACATA TCGCCATGCG TCAGGCCAAG AGCATGCAGG GCTGCACCTA TCACCTGTTC
GACGAGCGCA TCAACCGCAA CGCCCGCAGC CTCGCCGATC TGGAAGGTGA ACTGCGACGC
GCCTTGCGCC GCGATGAGCT GGAACTGCAT TACCAGCCGC GCCTGTGCCT GGACAGCGGA
CGTATCGTCG GCCTGGAAGC GCTGGTGCGC TGGCGCCATC AGGAACGCGG GCTGCTGCCG
CCCAGCAAAT TCGTGCCACT GGCCGAGCAA AGCGGCCTGA TCGTGCCGCT CGGCTACTGG
GTCATCTTCC GCGCCCTGCG TGACATGCAG GCCCTGCGCG AACAGGGCTT TGCCCCGCTG
CACATGGCGA TCAACCTGTC GTTCCGGCAG TTTCAGGACA GCCAGTTGCT GCCGACCTTG
ACTCGCCTGA TCGCGGAACA CGATGTCGAC GCGCGCTGGC TGGAGTTCGA ACTGACCGAA
ACCGCGGTCA TGCGGCGCAG CGATCAGGTC AGGCAGACCA TGGACGCATT GCGCCAACTG
GGCGTGCGCT TTTCGCTGGA CGATTTCGGC ACCGGCTATT CGTCGTTCAT GCACCTCAAC
AGCCTGCCCA TCGCGCTGCT CAAGATCGAC ATGACTTTTG TCGGGCAGAT GGAGTTACGC
GAAGAGAACC GCAAGCTGGT CAACGCCATG ATCAATCTGG CGCACAACCT GAACCTGGAA
GTGGTCGCCG AGGGCGTGGA AACCGCCGGG CAACTGGAGT TGCTGCGCAG TTACGGCTGC
AATCAGGTGC AAGGCTATCT GATCAGCCGG CCGCTGCCGG TGGAAGAACT GGTGACCTAT
CTGCGTTCGG AAGTGGCACA CGCCGATACC TCCAGATCCG GGTGA
|
|---|
| Protein sequence | MPTPVEPLRL LLLAHEPFWQ ALLSGCLTAP GSNVILLHGA NWDVFSARYA NERNTVLLTT
PDLQPRTGAC LLPTVVLLEA EPLVGPTGVS DWLVRDALTG DTLRRCLRYV HERSRLEDSL
RRLVGQDPLT GIANRQGFQA LLSARLSEGG SVALGHLDLD NFRRANDSLG HQAGDRLILQ
VVARLKNQLD AGDQIARLGG DEFALLIDTR TAPERALQMA ERITDVLAEP YWVDGESLLL
GCSLGIAHSQ AQPEADPLMW HAHIAMRQAK SMQGCTYHLF DERINRNARS LADLEGELRR
ALRRDELELH YQPRLCLDSG RIVGLEALVR WRHQERGLLP PSKFVPLAEQ SGLIVPLGYW
VIFRALRDMQ ALREQGFAPL HMAINLSFRQ FQDSQLLPTL TRLIAEHDVD ARWLEFELTE
TAVMRRSDQV RQTMDALRQL GVRFSLDDFG TGYSSFMHLN SLPIALLKID MTFVGQMELR
EENRKLVNAM INLAHNLNLE VVAEGVETAG QLELLRSYGC NQVQGYLISR PLPVEELVTY
LRSEVAHADT SRSG
|
|---|
| |