Gene CNH01780 details

Gene Information

• Locus tag: CNH01780
• ID: 3259212
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006693
• Strand: -
• Start bp: 620528
• End bp: 627721
• Gene Length: 7194 bp
• Protein Length: 2245 aa
• GC content: 49%
• IMG OID: 638258310
• Product: hypothetical protein
• Protein accession: XP_572352
• Protein GI: 58270392
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1112] Superfamily I DNA and RNA helicases and helicase subunits

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTTG ATTTCAGCTT CGTCAACCGC AAGCCTCCAA AATTCACCGT TCTTTACTGC 
TCCAGTTTCG ACCGCCTGCC ACCGCTTTTT TCATCCGGCA TCAACCATAC ATGGTGGCAG 
GATATGTCCT CTGATAATCC ACGTCCGGAG GACGTCGAAA CCCTCCTCGC TGCAAGGCGC 
AGAGTTCAGG AGAAACCAAA TACGGACGCC CTTCTTCCGG TCTACTTGTA CTTGTTACCC 
CAATCGAATG AGGCGTCGTC TGGCTCCAGC CCTTTGGAGG ACCACTGGTA CTGCAGCAGG 
TCCAAGTCCA CTCTCCACAT TGAGGCCGCC ACATATCTTA TATTCCTCTT TGCCTTCCAG 
CGTCAGGGCA CTTCAAAGAC TTGGGTTGAC AAACTAGAGG TCGTTCTCGA ATCATGCGAG 
AACTGTGCTA GGAGCTTTGG GGTCGCGAGG AGACGTTTAG AATCTAGGTG GGTATCTATT 
GCTTCTCGAA ATCATCTTTG TCTAATTGTA AATTAGATAC CTCTCTGAAT GGCCAGCACA 
TGTTCGGAAG AATTTCTTTG CCGCTGTTGA TAAGTGGCAA AGCACTTTCA TTCTCAACCA 
TTCCGATAAA GCCAGTGACA GAGGGTATGG AAAGCCAAGT TCCACTGAAC CTGCGCTCTA 
CTCTCTCAGT CAGCCTATAG TTCAGTTGTT ATTGGGTGAA CCGTCGCTGT TATCTGATCC 
TGGCGTCAAC AGCTTATATC AAGACGCCTT TCAATCGACA CTTCCTGCGC CAACATCACT 
TACCGCTCTT GGAATGACCC CTATACATGC TCGGCTACTT TCCTCCTCGG AGCCTGCGCA 
AAATCGTTGG TCTGCAGCCC AACTGCCGGC TCTTGCCCGT CGGCCAATTC GGTTCTCAGA 
ATGGTGCAAT TTAGGAATCG GGAGCGAGAT CCAAGATTTG TATAATGATG GGGCGCTCGA 
TGGAGAAAAA CGGTGGCAAA ATGTTGCAGC AATTCTGAAT AATAAGGTTC TCGACCAAGA 
AACTGTTGAA AAAGGCCTTT TGGGTGGCCA GCTGGAAACT GACTCGCGAG GGAGAAAGGG 
GAGAGGAGTG ATGTCTGTGC TGAGTGGCCT TTTGAGTAGT GACATTCCTT GTAAGTATCG 
TGTCACTGAA TAGGAGCTTT GTTCCTAATT GCATTTAGAT CTGGAATCCG TCATTTCCTG 
CCTTGCTACT CTTCTGCACA CTTCACCGAC GCGATACATA TGGTCATTCG ATACTTCCCC 
CGATCTTCCG CATACCCTTA TATCAGAGCT TCGAACAAAT CCGGCATTCA ACGAACTTCT 
CGAAACCCGT TATCCCTCAC CGCTCGATTC CGAAGCTGAC GGCCATAGTG CTCATGGCAA 
TGGCAGCAAC AAGAGCAAAG GGCGACGGAA GCCGGATACA AACCCATTGG ATTGGTTAGG 
GGACTATCTG TTGTCTGTAG CAGACACAGA GAAAGGATTG GTCACTCAAG TTGGTGAAGA 
GAAAGGATCT GGAATGGCAT TTGCCGAGGC TCTTGCAGTA ACCACCAATA TGGTCTTCCA 
AGAGCTCCAG CACGGTAGGC TTTCAAACGA ATTACGTGCT ACAGCGGCTT CCGCTGGATT 
TGAGGTTCGT GATGTTCACT GTTCCATCAA CGCCACGTTA ATAACATGCA TAACAGGCAA 
TCCTTCGAGT TTATCAGACA CTGATTGCAG AAGACGTGTC CGTGAATACC GCCATCTCCT 
CCACACTAGA CCTTCACTCC TCGTTTATCA CAACCGTCGC TTTCCGCTCG AAGAACCATC 
CCCTTCCTGC ATGGTGTGAA GCCCGTAGTT CTGCTCGTGC TCTCCTCACC ACTATTTTCC 
AAGCAGACGC TCGATCTACA ATTCATAGTT TATTAACAAT GGCGGCGGTC GCCCACGAAG 
AAAGAAAACG TCAACAGAAG AAGAGAAGAA CCAAGTCCGA TGTTGCTGTT GGTCCTGCCA 
AAAAGGTTGA CCATCTACCA CTTGCATCCG TGCGAAAAGA TTTGTGGTCC ATGGCTTACG 
ATGCGCTGTC ACCCAACGAT GCTGCGGGTG CTGCTATCCT GCTCAAATCT CTCGCACCCT 
TCTCGCATAT TGAATTACTT GACAGGCAAG CTTCGTGGTA TCACCATGGT CTAGAAGAAG 
CAGTAAAAAA GGAAGACTGG GTTGCGGCAA TAAGAGCAAT CAATACTGCC ATCAAAGCTA 
CACGTGAATC TTTCCCTCGC GCTATCGAAT CTTTGGCCAG TCAAGCAGAT CCTTCCGGTG 
TCAGATCATT ATGGAAGGAG CAAGGAGTAG CCAAAGCTGC GACCATCCTT CTCCTGTCTC 
CCGACGATGA AATCCATACG CCTATCATCA GTATCATTCA GCAATCTTTT GATGACGTCG 
ACGATCGAGG GGACTGTTTC CGTGCTCTCC TCCAGCACTA TCCTGATACA GCTGTAGATG 
GGCTCAATGA CTTTTTGCGT ACTTTCATTG AAACTGCAAG GATCACCCCA GAATCATGTT 
CTTTAGCGAA ATGGCTTGTT CGTTGCTTTC ACGATGTGCT TGAAGTCCTC TGCCGACCAT 
CAGGGGTATT AGGACCGCTT CTCCAATCAG ACGATTTCCT TACTTCCTTT GCAGACGGTA 
GAAGCATGCG AAAGAGATTG GAAGAGCTTT GGCATCTGAT GACGACGTCT CTTGCGCTCA 
TCTTCAAACG TACCCTTGAT TGGGCGCCTC ATTTCGAGAA CGAGGTAATG GTAGACTGGA 
TGCGGGACGC GCTTATCTTT GGCCGACAAA TGACTGACCA TATTAGAGCT TTTGAGGCAG 
CAGTTTTGGG ATCGAGTGCA AGAGGTAGTG AGACCATGTC AGAGTCTTCG GCAAGACAAA 
GTCTAGTGGG GAAAAAGATG ACGAAGCAAT TAGAATTGGT GTTGTCGGAT CTTATCTTAT 
GGCTCAGACT GACCGAGTAA GTCAGGCTTT ATGGGAGCCA CGGCATACCC GCTAACATTG 
TTATATAGTA TTGAAACATT GTTTCAGACA CATCAACTAA TCAAAACCAT CCTGGGAAGG 
ATCAGCAAGA GCACGACAGA CGTTTCCAAA AACCCCACCC TTGAGAAGAC CTTGCTTGAT 
ATTGATAAAT TCTGTCGCAA AGGCTCTCGA AGTTTTACAA GTCGGCTCTC TGATGACTTG 
CTTTCCGAGC TTTCTGATCT TCTCGAACCG TTTAATCTGG TCGATGATTC CGAAGTGCAG 
TTTGTCAAAG AAGTCAAGCC GAAGTCGTCA TCAGATGTCG GTACCTCGCG CGAGTCTACT 
TCGAATATCA GCACGCCCTC GACGTCTAAA GCTCCAGTTC GCAATGCGTT CACTGAGATG 
ATGAAAGCGT CAGGTGGTAA ACTGGCATCT AGCAGCAAAA CATCAACGTC GACTGCGAAA 
TCAAAACTAC CTACGCCCAA TGACGTTGTA GACGTCGATG ACTTTGACGA CGATTTCCTC 
AGCAATATTT CAGCATCCGA TCTTGACCTC ATAGAGAAAC GGGCTATCCT GAAAGAATCC 
GCTCGTCAGG CGCCTCCGAA ACCCTCGATT CAATCGAGAC TTTCCACATC TGCCAGACCT 
CATATGCCCT CAAGCAAACT GCATGTCGAC CTGACGTACA AGGTGCCCCC CAAACCCGCT 
CCTTCTTTCC AGTCAAAGGT GATGCAGGAC ATCCGCAGAG AACATTATGC TTCCATACAT 
GAACGGAAAC GATTAGAAGC AGGGCAAGTC GCACCAAAGT TACCTACGGC GTCTGCTTTA 
GGTAGTGGAC TCGGGGCTTA TACTGGTCCT CCTAAGCCCA GAGTGGTTGA ACCTGTAGAC 
AGTGGCTCGA GTGCATCTGA TTCATCAGAT GACGAGAGAG CCGCGATGAA GGGTTTACTC 
TCTAAGCAAA AGTCACCAGC GAAACCAGTT CGGCCAGTTG TTGAGAAGAG ATCCATCAAG 
GTGCTAGGTG ACCCTATAGC TGAAATCCAT CGACGAAATG AAGACCGAAG AGCTAAGGCC 
CATGCTACCA AGATGAGGCT GAAGCCAGAC CTCAGCCCTC TTTACCGTTA CATTCTCTCA 
TGGGATCCTG ATCACCAAGG GCCATCACCT CCCTATGGAA CGAAATTTGC AGCAGAGCTA 
TCAGATATGC GCGTAGTTCC GACAACATTT GATAGTCCAA GACAGTACGA GCGCATCATG 
CTTCCATTGT TTTTGCAGGA GCTTTGGTCG CAGTGCGCAA ATGACCAAGT ACAAGTGGGA 
CCTGTCATAC CAGTAGAGGT CGCATCAAGG CAGTACGAAG ATGATTTGGT AGAAATCGAT 
CTCATGGTTA TCGGGGCGGG AGATTTCTAC TGTAATGACT CTGACCTTGT CACACTCCGG 
CAACCCAGCA ATCCCAAAGG CATCTTTGCA AAAATCATGG GATTCAAGAA ACATCCGAAA 
GGCTCGATGA TTAGAGCACG TATCATGTCT GCCATGGACC AAAAAGAACT TTGCGGGAAG 
TCCAAGTGGC AATTGCGCAA GCACGTCTCG TGAGTCACAC TTCGAGTATC TCGCTGGTGA 
TGTAGCTCAT ACATATCAGT CTAAGCACTT CCATTCGAGA GTTCGCTGCC TTGAAAGGTC 
TACCATGGTA TGAATCCAGT CTTTTGTCGG ATATTTTGGC AGGACGAAGC GCTGTCATGC 
CGAAATTATC GACTCAGAGA ATTGAGGATA CGATGAAGTG TTTGAGCCTG AACGAACCGC 
AGGCGAAGGC CGTTCTTGGG GCTTTGGAAG TCAGAGGGTT CGCACTTATC CAAGGGTATG 
TGGCTTGAGC TTTGAAACTC AATATAAAAG GCCTACTGAC GCAAGGAATG GTGTAGCCCT 
CCAGGTACAG GTAAAACAAA AACTATAAGT GGTCTGGTGG GCAAATGGAT GTCTGAACGG 
AGGGTACCGA TCTCAGTCGA TGGGCAACCC CCCGTCAAGC CCAAGTTGCT GGTATGCGCC 
CCCAGCAATG CCGCTATTGA TGAAGTCTGC AAACGACTGA TCCTCGGAGT GCCCAACCCT 
GACGGTGGTC AATATAATCC GAATATTGTT AGGGTGGGTA TTGACGCTTC GGTCAATATC 
GCCGTGAAGG ATGTGTCATT AGACAGCCTT GTCGAAGCAT TGATCAGCAA TAGTTCAGGA 
AGAAACGTTG GAGGGGAATA TGGGAGGATT CAAGCGGAGC TGGATGATGT CAAGCAGCAG 
ATCAAGGACA AGCAGGAGGC GATTAAGCTG GCTCAAGATC ATGACGAAAA GCGGAAGGTC 
CTGGAAGACG AATATCACGC CCTGATTACT CGCCGTACAC AGCTTGGTCA AGCATCCTCC 
AAAGCAAAGG ACGCTGCCAG AGACGCAACT CGCCATCTCG ACGGTGCTCG ACGTGCGGCT 
AGAGATCAGA TTCTGAAGGA TGCTGATATC ATCTGTGCTA CTCTCTCCGG TGCAGGCCAT 
GATACATTGG CCGCCCATAC CTTCGAGACA GTAATCATTG ACGAAGCTGC TCAAGCCATA 
GAAATGAGTT GCCTGATCCC CTTGAAATAC GGGTGTAAGC GGTGTGTCAT GGTTGGAGGT 
AATTTGATTT CGCATCCTGC GAGCTTGACA GGCCGCTGAC AAAATGCAGA TCCCAATCAA 
TTACCCCCAA CTACATTCAG TACCAACGCT GAAAAGCTTC AGTACAATAA GAGTCTGTTC 
GTTCGCATGA CAAAACGCGA CGCCTCTCAT GTTCAGCTAT TAAGGTAAGC AACCCAGTCA 
CGTTCGGGAC TGACTACTAT CATATAGCAT CCAATATCGA ATGCATCCGT TCATCTCGGA 
ACTTCCCTCG AAGGTGTTCT ATCATGGTCA ACTCAAGGAC GGGCCCAGTA TGGCGAAGAA 
GACGGCGGCT ATCTGGCATC AGCGAAACAT CTTTGGTCCA TATCGATTTT TCAATGTCGA 
AGGCACGGAA ATGAAAACGG GCACATCCAC CAAGAATCCT GCGGAGGCTC TTGCTGCAGT 
CGAACTATAT CGTCGTTTGA GCGCCGATTT CGGGACGAGG GTGAATCTCG CAATGAGGGT 
TGGAGTGATC TCAATGTACA GGGAACAGTT ATGGGAGTTG AAACGAAAGT TCACTGAGGC 
CTTTGGTTCC GCAATTTTGG AACTCGTTGA GTGAGTCGAT TGGACAGACA TTCAATGCCT 
ACGACTAACA TCTGTTCAAG ATTTAACACT GTCGACGGTT TCCAAGGCCA AGAGAAAGAC 
ATCATCATCT TGTCTTGTGT TCGGTCCGGG CCAAATCTGA GCCATATTGG TTTCCTGAAA 
GACACCAGGC GAATGAATGT CGCACTCACT CGTGCCAAGA GTTCGTTATT TATCTTTGGA 
AATGGACCTA CTTTGGAGCG AAGCGATGAA CGATGGAAGA TTATCGTCCA GGACGCAAGA 
GACAGAGGTT TCTTCGTCAA TGTGGGTTGT TTCCCGTGCT CCAAGGCTTT GCTAATCATG 
TCGCAATTGT TCCAGTATGA TTCTACTACA TTCAACACAG CATTCTTGGA GCCTCCGCCT 
TCAGTCAAGA AAAAGGCATC TGCCACCTCC AAATCCAAGG CTTCCCCAGG AGCATCCAAG 
TCTACGACCA TGCCTGACGG CTTGCTACCT CCAAAAGACC TGGCTGCTGA CATATCGACC 
CCTTCCAAGG TCAAGCGAGA GGCTAGCGTT GAGCTGGCTA AGGAGAAGAA GAAGAAGCGA 
AAGATGTCCG ATGGCTCATC ACGAGCTGAG GAATCGAATT CTAATGTAGC TGTTGCCACG 
AGCAAACCTA CTTCTCGATT ATCCTCTGGA TCTACCCTGC CCTCTGTAAA ACATGCCGAA 
GATAGCCCAC AGCCTTCCTC CTCCAAACCG CCGCTACCCA GGATACCGCG CCCTCCACAG 
TCGTCTACCG CCTCGAAAAT GACACGACCC CCTCCGCCGC CGCCCGAGGA TGTGCTCTTT 
ATCAAAAAAA AGAAAAAGGT ACGTTTTAAG CCCATATACC CCAAGCAATA CATATTAATT 
AGTTGTATAT GCAGCGACTC AACAAGTAAG AATTTTAGAA GCACTACACA CGCTATTCTT 
CATCCATCCA TTCGCATTTG TTTGCAATCT CCATCCACAA TACCATCATA TTTTCTGGCA 
GTAAGTATCG AAGACGTACC AGAAGTCGTT CGTCAAATTA GTACTGATGT GTGA 

 

Protein sequence

MSFDFSFVNR KPPKFTVLYC SSFDRLPPLF SSGINHTWWQ DMSSDNPRPE DVETLLAARR 
RVQEKPNTDA LLPVYLYLLP QSNEASSGSS PLEDHWYCSR SKSTLHIEAA TYLIFLFAFQ 
RQGTSKTWVD KLEVVLESCE NCARSFGVAR RRLESRYLSE WPAHVRKNFF AAVDKWQSTF 
ILNHSDKASD RGYGKPSSTE PALYSLSQPI VQLLLGEPSL LSDPGVNSLY QDAFQSTLPA 
PTSLTALGMT PIHARLLSSS EPAQNRWSAA QLPALARRPI RFSEWCNLGI GSEIQDLYND 
GALDGEKRWQ NVAAILNNKV LDQETVEKGL LGGQLETDSR GRKGRGVMSV LSGLLSSDIP 
YLESVISCLA TLLHTSPTRY IWSFDTSPDL PHTLISELRT NPAFNELLET RYPSPLDSEA 
DGHSAHGNGS NKSKGRRKPD TNPLDWLGDY LLSVADTEKG LVTQVGEEKG SGMAFAEALA 
VTTNMVFQEL QHGRLSNELR ATAASAGFEA ILRVYQTLIA EDVSVNTAIS STLDLHSSFI 
TTVAFRSKNH PLPAWCEARS SARALLTTIF QADARSTIHS LLTMAAVAHE ERKRQQKKRR 
TKSDVAVGPA KKVDHLPLAS VRKDLWSMAY DALSPNDAAG AAILLKSLAP FSHIELLDRQ 
ASWYHHGLEE AVKKEDWVAA IRAINTAIKA TRESFPRAIE SLASQADPSG VRSLWKEQGV 
AKAATILLLS PDDEIHTPII SIIQQSFDDV DDRGDCFRAL LQHYPDTAVD GLNDFLRTFI 
ETARITPESC SLAKWLVRCF HDVLEVLCRP SGVLGPLLQS DDFLTSFADG RSMRKRLEEL 
WHLMTTSLAL IFKRTLDWAP HFENEVMVDW MRDALIFGRQ MTDHIRAFEA AVLGSSARGS 
ETMSESSARQ SLVGKKMTKQ LELVLSDLIL WLRLTDIETL FQTHQLIKTI LGRISKSTTD 
VSKNPTLEKT LLDIDKFCRK GSRSFTSRLS DDLLSELSDL LEPFNLVDDS EVQFVKEVKP 
KSSSDVGTSR ESTSNISTPS TSKAPVRNAF TEMMKASGGK LASSSKTSTS TAKSKLPTPN 
DVVDVDDFDD DFLSNISASD LDLIEKRAIL KESARQAPPK PSIQSRLSTS ARPHMPSSKL 
HVDLTYKVPP KPAPSFQSKV MQDIRREHYA SIHERKRLEA GQVAPKLPTA SALGSGLGAY 
TGPPKPRVVE PVDSGSSASD SSDDERAAMK GLLSKQKSPA KPVRPVVEKR SIKVLGDPIA 
EIHRRNEDRR AKAHATKMRL KPDLSPLYRY ILSWDPDHQG PSPPYGTKFA AELSDMRVVP 
TTFDSPRQYE RIMLPLFLQE LWSQCANDQV QVGPVIPVEV ASRQYEDDLV EIDLMVIGAG 
DFYCNDSDLV TLRQPSNPKG IFAKIMGFKK HPKGSMIRAR IMSAMDQKEL CGKSKWQLRK 
HVSLSTSIRE FAALKGLPWY ESSLLSDILA GRSAVMPKLS TQRIEDTMKC LSLNEPQAKA 
VLGALEVRGF ALIQGPPGTG KTKTISGLVG KWMSERRVPI SVDGQPPVKP KLLVCAPSNA 
AIDEVCKRLI LGVPNPDGGQ YNPNIVRVGI DASVNIAVKD VSLDSLVEAL ISNSSGRNVG 
GEYGRIQAEL DDVKQQIKDK QEAIKLAQDH DEKRKVLEDE YHALITRRTQ LGQASSKAKD 
AARDATRHLD GARRAARDQI LKDADIICAT LSGAGHDTLA AHTFETVIID EAAQAIEMSC 
LIPLKYGCKR CVMVGDPNQL PPTTFSTNAE KLQYNKSLFV RMTKRDASHV QLLSIQYRMH 
PFISELPSKV FYHGQLKDGP SMAKKTAAIW HQRNIFGPYR FFNVEGTEMK TGTSTKNPAE 
ALAAVELYRR LSADFGTRVN LAMRVGVISM YREQLWELKR KFTEAFGSAI LELVEFNTVD 
GFQGQEKDII ILSCVRSGPN LSHIGFLKDT RRMNVALTRA KSSLFIFGNG PTLERSDERW 
KIIVQDARDR GFFVNVGCFP CSKALLIMSQ LFQYDSTTFN TAFLEPPPSV KKKASATSKS 
KASPGASKST TMPDGLLPPK DLAADISTPS KVKREASVEL AKEKKKKRKM SDGSSRAEES 
NSNVAVATSK PTSRLSSGST LPSVKHAEDS PQPSSSKPPL PRIPRPPQSS TASKMTRPPP 
PPPEDVLFIK KKKKVRFKPI YPKQYILISC ICSDSTSKNF RSTTHAILHP SIRICLQSPS 
TIPSYFLAVS IEDVPEVVRQ ISTDV