| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CND05240 |
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| Symbol | |
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| ID | 3256893 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_006686 |
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| Strand | - |
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| Start bp | 1432047 |
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| End bp | 1433896 |
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| Gene Length | 1850 bp |
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| Protein Length | 434 aa |
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| Translation table | |
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| GC content | 52% |
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| IMG OID | 638256460 |
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| Product | mRNA catabolism, nonsense-mediated-related protein, putative |
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| Protein accession | XP_570577 |
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| Protein GI | 58266842 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0724] RNA-binding proteins (RRM domain) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.115659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TCTACTTGAG ACTCGCATTC CATTTCTCTT TCCGGGCATC TGGTTTTTCT TTCTCTCTTT
AGATTCTATT TCTCTCTCTT CCTATCTCTT CCTTATCTTT GTTTTTATAA AAAACAACAC
TCCATCGCAA TGGCTGCTCC GTTCGTTCAA TACGGCATCA CCCCAGGTCA ATCCGCTGAA
GCTCCCAAAC GACCCCACCT TTACGTCGGC AACCTTTCTC CCCGAGTCAC CGACTACATC
CTCACAGAGA TTTTTGCTGT CGCCGGTCCC GTCGTCAGCG CAAAGATCAT TCAAGACCGG
AATTTCCAGC ATGGTGGATT CAACTATGGT TTCGTCGAGT ACGCCGACAT GCGCTCTGCC
GACCAGGCGC TCACCACACT CAACGGCCGC AAGATCTTTG ACGCCGAGAT CAGGGTCAAC
TGGGCGTATC AGGGTAACCA AAACAAGGAG GACACACAGC ATCATTACCA CGTCTTTGTT
GGAGACTTGA GTCCAGAAGT GAATGACGAT GTCTTGTCAA AGGCGTTTGG TGCCTTTGGT
AGTCTGAGCG AGGCGAGGGT CATGTGGGAT ATGAACTCGG GAAAGAGCAG AGGCTATGGT
TTCCTCTCCT TCCGGTATGT TTGACGTACT CTAATTCAGC ACGTTCGATT TGCTGACATT
TGCTGTTATA CATAGTGACA AGGCTGATGC TGAGCAAGCC ATTGCTTCCA TGAACGGCGA
ATGGCTCGGT TCCCGTGCCA TCCGTGTTAA CTGGGCAAAC CAGAAGACTC AGACAGGCGG
TACTCGAACC GGCGGCGGCA CGCCTTCCTA CCCGGCACCC CCTATGGGCG CCCCTCCCGC
TCCCGCGGGT GTCCCTTCTG CTTACGGTGC CCCCGCCCCT GGTGTTGTTC CAGGCGTCGG
TGTTGGTGGT GCCGTCGGCT CATATGAGAC TGTTGCTTCT CAAACACCCG AATTCAACAC
TACGGTCTAT GTCGGCAACC TTATTCCTTA CACCACTCAA GCCGACCTCA TTCCGCTTTT
CCAGGGCTAT GGCTATATCG TTGAAATCCG CATGCAGGCC GACAGGGGCT TTGCCTTTGT
CAAGCTTGAC ACGCACCAGA ATGCTGCTTT GGCTATCACT CATTTGCAAA ACCAGCTGGT
GCACGGAAGG CCCATCAAGT GTTCTTGGGG CAAGGACAAG GGATCAATGG AAGGTGGCGC
ACCTGCGGCT GGGTACCCCT CCATGGTGAG TTTCATGCCA ATGCATCTTC TTTTTGAATT
TAAATTTAAT TTCTCTTTCT GCATAGCAAC CTCAAATCGG CTATCCCAAC TACAACTACT
ACGGAGGATA CAACTATAAT CAGGCTGGCG TTCCAGGTCA GCCGGGACAG CCTGGCGTAG
CTGTCGCTAG CCACCCTGCT CCCGCCGTCG GTGCTGTCGG AGCCGTCGGA GCCGAGAGCC
AGGCTCAGCA AGGCGCGTGG GACCCTGCTG CTGCTGCCGC GTATTACCAG GCTGGAGGCT
GGGGTGGTTA CTACGGTATG TCTGTCATTC ATTTTGTCTG CTGAGTCATG GCTAATGAAA
TCGATCACAA ATGCAGCTCA ACAGCAAGAC ACTCAACAGC CCTCCGCGCA CCAGTAAGAT
GTTTGGCATG AGATGGTCTT TGGCTGAGCC GAGATGTGTT TGGGTTGAAG GGGGAAAGAG
GGCACTGAGT GAGTTTGAGC TCAGGATGAG GGATCGTGAA AGCTCCGAGG AGATGAGCGA
ATGATGGCGG ATGCAAAAGC ATTTATTGCC TTAATTTCGG ATACATATTT AAGTTTGAAG
AGTTACGTCT AGGGGATTCC TTTTATGTAT CTTGGTGATA TTTGGTAGGA
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| Protein sequence | MAAPFVQYGI TPGQSAEAPK RPHLYVGNLS PRVTDYILTE IFAVAGPVVS AKIIQDRNFQ
HGGFNYGFVE YADMRSADQA LTTLNGRKIF DAEIRVNWAY QGNQNKEDTQ HHYHVFVGDL
SPEVNDDVLS KAFGAFGSLS EARVMWDMNS GKSRGYGFLS FRDKADAEQA IASMNGEWLG
SRAIRVNWAN QKTQTGGTRT GGGTPSYPAP PMGAPPAPAG VPSAYGAPAP GVVPGVGVGG
AVGSYETVAS QTPEFNTTVY VGNLIPYTTQ ADLIPLFQGY GYIVEIRMQA DRGFAFVKLD
THQNAALAIT HLQNQLVHGR PIKCSWGKDK GSMEGGAPAA GYPSMQPQIG YPNYNYYGGY
NYNQAGVPGQ PGQPGVAVAS HPAPAVGAVG AVGAESQAQQ GAWDPAAAAA YYQAGGWGGY
YAQQQDTQQP SAHQ
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