| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNB03440 |
|---|
| Symbol | |
|---|
| ID | 3256052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006684 |
|---|
| Strand | + |
|---|
| Start bp | 1032209 |
|---|
| End bp | 1034324 |
|---|
| Gene Length | 2116 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | 638254989 |
|---|
| Product | conserved hypothetical protein |
|---|
| Protein accession | XP_568918 |
|---|
| Protein GI | 58263016 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
[COG1611] Predicted Rossmann fold nucleotide-binding protein |
|---|
| TIGRFAM ID | [TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00118084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GCTTCTTCCC CTGCCATACA ATAATACCTG CATTCCCAGT CCCCTCCTGA ATCCCCGCCA
TCTTCCGATA TCTCCTCACA ATCTATACGG CCTGACACCA TGTCCCCTTT CCCCCAGACC
GCAAAGCTCA ATAACCCTGT CTGTGTCTTG TCAGTCAATA ACGTTACATG CCCCGTATAA
TCCTGCTCAT TTTAATGCTT TTAGCTGTGG CTCATCCCCA GGAAACAAGC CCCTTTTTGT
CAAAGCCGCG GAATCAGTTG GTAAAGGTCT TGCCAAAGCC AATATACCGC TTGTCTATGG
CGGTGGCCGA CGAGGTATCA TGGGTATGTC TAGCCGATAT CAATACTTCA CACCCCACTG
AACCTACCTC CAGGCGTCGT CTCTCAATCG GCATTGTCCG CCAATGGGTA TGTCCATGGC
ATTCTCCCTC GTGCACTTGT CGAGCCGGCA TCGGAACCCA CACCGGCTCC GTGGTCTACC
ACGAACGGAG ACACGGCCCG GAGCAAGGAA GGGACTGGAA AGGATGTCGT GGAAGATGAC
AACCAAGCCA AGTTGACCGT CGAGGTTGTT GGGACTATGC ATCAGGTAGG TTTCCCGACA
GTGATATATG TCCTTGGCAG ATGTCGTGCG ATCGGACTAA TGAACGTGGT TGACAGCGAA
AGCTGGCCAT GGCTAAACTG TCAACCGGAG GGTTTATAGT GCTTCCTGGC GGCTATGGTA
CTCTTGAAGA AGCTCTTGAG ATGATCACCT GGAATCAGCT CGGTATCCAT CGCCTTCCCA
TCATCATCTT GAACATTGGC AACTTTTTCA CCCATCTCTA TAAGCAATTC GAGAACTCAG
TCGAGGCTGG CTTTATCGCT CCCAGTAACC TCTCATTGTT GAGACTGGTC GACTTGGAAG
GCGGTGAGGA GGCCAATATT GATGAAACAA GGGCAGATGA ATGGGGTCAA GCTGCCCTGA
AAGCTCTCAA AGAGTGGAGC GTCGATGTGA GTCATTTCCG ATGGACAGGC TCGTGTTCCC
GCTCATGTCT TCTTGCAGGA GGATGTCGGA TACAATTTAA ATTGGAAAGA AGAAGATGAT
GGCGGCACAC AAGATACTGT ATGATATCTT CACTCATTTA AATCACACAC CTATCATTGT
CCATCATGCA TTGACCATAT CATCTCTAGT TTCGTAGCCC CTCCTACCTA TTTACCACCA
TGCGCTGTAC CTTTCCCTCG GCCACATCTA CCTCTATATC CGAAGCAGAT TTGCCGTTAA
TCGGCTACCA CCTTGAGCGA CTCCGAGAGG CACATGCCCA CTTTGCAGAG CGTGATACGC
ATTACTGGGG TGAATGGCCT GGTGACGACT CTGTCACGGA CAAATGTTTG CAAGTCTTAC
GAGAGAAAGC ACAGGAAGGC GAGGGGGATT ATCGAGTTAG AATTGTCATC TGCCCGAAAG
GTATAGTCAA AGTTGAAGTG CCTCCTGCAC CCAAAGATGC CGGTGGGTTC TATTTTTACG
CACTTGTGGA AGATCCACGC GCGCTGACCT CATTTTCCAT TCAGGCCCAT TCAGTTTGGA
GATCCCGACT GCCTCGATGG CTAGAGCAAG ACCTCTGGTG CTTGATCCAG CTGTTACCGA
CGTGCGAGGA GAAGACCCAT CGAATAGAAA GTTTAGATTA TACAAAACCA GCCAGAGGGA
ACTGTACGAT CTGGCATATG AGCGTGGTAG TGAGTGCCTT GACATTTTAT ATTTATGGGC
GTGTTTAAAC AAGTTGGAAC TGACAGACAT ACTCCAGGCA CTCTTTCTCC ATGTCACCCT
GAAGTTCTCT TGCACACATC AACTCATCTC CTGGAAACTA CGACTTCAAA CATTGCTATT
CTCTCTCCCT CCGGCCAGTG GATTACACCA TCGATTTCCT CTTCAACTCC TCTTCTCAAT
GGAGTTGTAA GGAGGTTTCT CCTGGAGAGC GGAGTCATAG AGGAAGGCGA ACTGACACTG
GCGGATTTTG AGCGCGTAAA GGCGGAAGGA GGACGAATCA TTGGATTCAA TGGTTTGAGG
GGTATCTGGG AAGGGAAAAT CATCTAGATT CCGCTGTTAC ATTACAGTAT GCGACTGTCC
TACAGTTACA TCTCGT
|
|---|
| Protein sequence | MSPFPQTAKL NNPVCVFCGS SPGNKPLFVK AAESVGKGLA KANIPLVYGG GRRGIMGVVS
QSALSANGYV HGILPRALVE PASEPTPAPW STTNGDTARS KEGTGKDVVE DDNQAKLTVE
VVGTMHQRKL AMAKLSTGGF IVLPGGYGTL EEALEMITWN QLGIHRLPII ILNIGNFFTH
LYKQFENSVE AGFIAPSNLS LLRLVDLEGG EEANIDETRA DEWGQAALKA LKEWSVDEDV
GYNLNWKEED DGGTQDTFRS PSYLFTTMRC TFPSATSTSI SEADLPLIGY HLERLREAHA
HFAERDTHYW GEWPGDDSVT DKCLQVLREK AQEGEGDYRV RIVICPKGIV KVEVPPAPKD
AGPFSLEIPT ASMARARPLV LDPAVTDVRG EDPSNRKFRL YKTSQRELYD LAYERGSTLS
PCHPEVLLHT STHLLETTTS NIAILSPSGQ WITPSISSST PLLNGVVRRF LLESGVIEEG
ELTLADFERV KAEGGRIIGF NGLRGIWEGK II
|
|---|
| |