Gene CNA00580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCNA00580 
Symbol 
ID3253449 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameCryptococcus neoformans var. neoformans JEC21 
KingdomEukaryota 
Replicon accessionNC_006670 
Strand+ 
Start bp162563 
End bp163778 
Gene Length1216 bp 
Protein Length166 aa 
Translation table 
GC content46% 
IMG OID638252391 
Productconserved hypothetical protein 
Protein accessionXP_567231 
Protein GI58259637 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2443] Preprotein translocase subunit Sss1 
TIGRFAM ID[TIGR00327] protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACATCA AAGAAAGAGT ACGCGGACGG GATCAGAATT GCCTAAAAAA AGGAACTCCA 
TCGAGCAATT TCCATCATGG TGCAGTGAAA TTCACGCCTA TGTATTTTGA AAGGCCCGCA 
GAGCTTCATC CAAGTTACTC GCGCCTACAT TTATCATCTC CACCTGCTAT CCGCCGGTTC 
CAGCACGCAA GTAACGAACA CGAACCAACT AACTGCTATC CTATAATCGA TCTGCCTTGC 
TTCACCTCTA CATCACTCAC CTCAAGAAAC CATCTTTCCA TTAGCACCAT GTCTGAGCGT 
CTCACCGAAT TTGCCGAAAT CCCAAGACAG TTCGTTAAGG AAGGAACCTT AGTATGTCCC 
TTCCCCATCT TCCACTTCTT CGGTAGTTTG TAGCTTAAGA GCTCGCACAC TGGCATATTT 
GGTTCTGGCT GATGTTTGTC TGTCTCTGCA CAGTTTGTGA ACAGGTGTAC TAAACCCTCA 
GCAGAAGGTC AGTCTTCATG CGACATTACT CTTTTGCTCC GTCTGTCCTT ACGCCTATAT 
GGCGTTCATT CGACTAGCAA CTTGCAGGAC AATCCACAAT GACTTTATTC ATTGTGGATT 
GTAATACCGT CAGAAGAAGG GAAGGCACTG CATGGTGCGG GCAGGATGTC TGTCACCAGG 
TTATCAACGG AGACGAGAGA TGTTTCGATT GAATGAGCAG AAAGCTGACG GACGTGGTCT 
TTCTTATAGA ATACAAGCAA CTCTGCCGAG CTGTTGCTAT CGGCTTTGGC GTTATGGGTG 
TTATTGGCTA CCTTGTCAAG CTCATTCACA TCCCCATGTA AGTATCGCCC TCTTTTTTTC 
TTACTTGCCT AGCCATGGAC GCTGATTGCG GTCTTTCTTT GCGCTATAGT AACAACATCT 
TGGTGTAAGT CTAATTTCTA TTGCTACGTT ATCATGCACC ATCCACCAGT ATTCTCCGCT 
ACTGCGACGT CCGGAGAAAT GGACGGGCAC GATAAGATGA GGGAAAGAAG CACGAAGAAA 
TAGGATCAGG GTGGCTGACT ACTCTTTCTT CCCTTCTACA GTGGCGGCGC TTAAAGGTAC 
TGGTTCCAAG AAGAGAGTAC AGTATCTGCA GGTTGGAATA AAAGGGGACA GGGGATGGGT 
TGTAGATTCT ATTGATTTTT CTCAGTCGCA TGTCGGGATA TTCTTTTGCA TCTCATGTCA 
CTGGCATATC TCTTTC
 
Protein sequence
MHIKERVRGR DQNCLKKGTP SSNFHHGAVK FTPMYFERPA ELHPSYSRLH LSSPPAIRRF 
QHASNEHEPT NCYPIIDLPC FTSTSLTSRN HLSISTMSER LTEFAEIPRQ FVKEGTLFVN 
RCTKPSAEEY KQLCRAVAIG FGVMGVIGYL VKLIHIPINN ILVGGA