Gene lpl1977 details

Gene Information

• Locus tag: lpl1977
• Symbol: secD
• ID: 3114212
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Legionella pneumophila str. Lens
• Kingdom: Bacteria
• Replicon accession: NC_006369
• Strand: -
• Start bp: 2217639
• End bp: 2219495
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637583748
• Product: preprotein translocase subunit SecD
• Protein accession: YP_127313
• Protein GI: 54294898
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAAATA AATATCCTCT ATGGAAAAAT CTAATGCTGA TAGTGATTGC AGTCATTGGA 
TTTGTTTACG CTATACCGAA TTTGTATACG GAAAATCCCG TTGTTCAAAT TTCTGCGGGT 
ACAGATGAAG ACACAGAGAC AATAAAAAAT CAGGTAGAGT CCATATTAAA AAATGCCAAT 
ATGGATTATA AATCTCTGGT TGTGGAGAGG GATGGGGTAG AGGTAGTATT TTCTTCTACT 
GATTCTCAAT TATTAGCTCG TGATGTTATC AAGAATAGCC TGGGATCTGA TTACACAGTG 
GCTTTGAATT TAGCGCCTTC CACACCAGCT TGGCTTGAAG CAATTCATGC TGACCCCATG 
AAGCAAGGGT TGGACTTAAG AGGCGGTGTT CATTTTCTTC TTGAAGTGGA TGTCGAGAGT 
GTTATAAGTC GGCGTTATGA AGGAATAATG AAAAATATTG GCCAAGAATT ACGTGAAGCA 
GGTATTCGTT ATTCAGGCAT ACGTTATTTA TCAGATAAAG GGATTGAATT GCGTTTCAGA 
GATTCTGACT CAATGGAAAA TGCTTTAGTT GAGTTAAGAC AAAAAATATC TGATGTGGTT 
TTTGTTAAAA CTAAAACACA AAATTCAATT TTAGGCGCCA TTTCTCCAGC AGAATTAAAT 
TCCATAAGAC AAAATACTAT TGAGCAGACA ATGAGTATCT TGAGAAATCG TGTCAACGAG 
CTCGGAGTTG GTGAAGCTGT CGTACAACAA CAAGGGGCGA CTCGAGTCGC CGTTGATTTG 
CCAGGCATTC AAGACGCAGC CAGAGCAAAA CAAATACTTG GTGGTACTGC TACTTTGGAA 
TTTCATTTGG TTGATCAGGA AAATGACCCT TTCATTGCAA AGCAAACCGG CGTAGTTCCT 
GTCAATGATA AGCTGTATAT GATGGATGGT CATCCTATCT TATTAAAGAG ACAGGTTGTT 
TTAAGTGGTG ACTCTATTAC GTCAGCAGTA TCCAGTTTTG ATCAACAAAC GGCTTCTCCA 
TCTGTTCAAA TTCAATTGGG TGGTGGGGGC GAGAGCTTGT TTACTAAAGT TACGCGTGAA 
AATATCGGTA AGCGCATGGC GATCGTTTTT GTGGAAACCA AAACGACTAC ACAAACAATT 
AATGGCGAGG AAAAACGAGT AACAAAGAAA GAAGAGCGAG TTATTAGTGC GCCAGTGATT 
CAAAATGCTT TAGGCAGTAA TTTCCAGATT ACCGGACTGA CTGATAGTAA AGAAGCGAGT 
AATCTGGCTT TATTATTAAG AGCTGGTGCT TTACCCGCTG CAATTTATCC TGTTGAAGAG 
CGTACCGTTG GCCCAACTCT TGGAAAGGAA AATATTCGCC GAGGACTTAT TTCCCTGGAA 
GTTGGTATGG GTTTAATTTT GGCACTAATG CTCGTGTATT ATCATTTTTT TGGTTTAATT 
GCTGATATTG CATTGATGCT GAATTTAGTT TTTCTTTGCG CATTGTTATC CATAATTGAT 
GCGACTCTGA CTTTACCGGG AATTGCGGGG ATTGTTTTGA CCGTGGGCAT GGCTGTTGAT 
GCCAATGTCC TGATTTATGA GCGGATTAGA GAGGAGTTGC GCAATGGACT GTCTCCTCAA 
GCTGCTATTC ATGCAGGATA TGAGCGAGCA TTTTCAACTA TATTGGATGC CAACGTGACT 
ACTTTAATTG TAGCTATCAT TTTATTCGCG GTGGGCACAG GACCGGTGCG CGGGTTTGCG 
GTTGTCCTTT CTCTAGGTTT GTTAACTTCT ATGTTAACTG GTATTACTTA CACCAGGGCT 
ATTGTGAATT GGTATTATGG TGGACGTAAT GTCAAAAAAT TATCTATAGG CATATAA 

 

Protein sequence

MQNKYPLWKN LMLIVIAVIG FVYAIPNLYT ENPVVQISAG TDEDTETIKN QVESILKNAN 
MDYKSLVVER DGVEVVFSST DSQLLARDVI KNSLGSDYTV ALNLAPSTPA WLEAIHADPM 
KQGLDLRGGV HFLLEVDVES VISRRYEGIM KNIGQELREA GIRYSGIRYL SDKGIELRFR 
DSDSMENALV ELRQKISDVV FVKTKTQNSI LGAISPAELN SIRQNTIEQT MSILRNRVNE 
LGVGEAVVQQ QGATRVAVDL PGIQDAARAK QILGGTATLE FHLVDQENDP FIAKQTGVVP 
VNDKLYMMDG HPILLKRQVV LSGDSITSAV SSFDQQTASP SVQIQLGGGG ESLFTKVTRE 
NIGKRMAIVF VETKTTTQTI NGEEKRVTKK EERVISAPVI QNALGSNFQI TGLTDSKEAS 
NLALLLRAGA LPAAIYPVEE RTVGPTLGKE NIRRGLISLE VGMGLILALM LVYYHFFGLI 
ADIALMLNLV FLCALLSIID ATLTLPGIAG IVLTVGMAVD ANVLIYERIR EELRNGLSPQ 
AAIHAGYERA FSTILDANVT TLIVAIILFA VGTGPVRGFA VVLSLGLLTS MLTGITYTRA 
IVNWYYGGRN VKKLSIGI