Gene lpp2310 details

Gene Information

• Locus tag: lpp2310
• Symbol: rpoD
• ID: 3118657
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Legionella pneumophila str. Paris
• Kingdom: Bacteria
• Replicon accession: NC_006368
• Strand: +
• Start bp: 2652058
• End bp: 2653923
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637581011
• Product: RNA polymerase sigma factor rpoD (sigma-70)
• Protein accession: YP_124621
• Protein GI: 54298252
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATGA ATGACCAAGA TCAGCAAAGC TCACAAATTA CGAAAGTCAT TAGCCTGGGT 
AAAGAGCAAG GTTATTTGAC TTACAGTCAA ATTAATGACT TATTACCTAA TATTGTGGAT 
ACAGAGCATT TTGATGTAAT CATTAGCATG CTGGAAGGCA TGAACATCAA AGTTTTTGAG 
CTTCCACCCA GTGAAGATGA ACTTGCGCTC TTATTAAATA CTGAGGAAGT CCCAGATATT 
GAAGAAGCAG CCATGGTACT CGCCTCTGTG GATAAAGAAA CAGGCAGAAC AACTGACCCG 
GTTCGTATGT ATATGCGCGA AATGGGCACA GTAGAACTGC TGACTCGTGA AGGTGAAATC 
CGCATTGCCA AACGCATTGA AGAAGGAATT TACCAGGTTC TAAAATCCCT GGCGCATTAT 
CCGGAAACAG TGCAACTGGT TCTTGAAGAC TATGATCGTT TCCTTGCGGA AGAAATTCGC 
CTCAATGAAA TCATTAGTGG TTTTGCGGAT GTTGATGAAG AAATAGCACC TGCTACTAAC 
ATTGGTTCCA TGCTGGATGA AGAGCAACAG GAAGAAATAC TTCTTGATGT CGATGAGGAA 
GATGAAGACG GCGAAGGTGG TATATCTGAT GTGGATGATG GACCCAATCC TGAGCAAGCA 
AAAATTTACT TTGATGAGCT GCGTGAGGCC TTTGAAAAGG CAATGAAAGC CCTCAAAGAG 
CATGGCCGTA CGAATAAAAA AACGGTTGAG TTGCTCGATT CCATGTCGGA ATCTTTTTTG 
AAACTTAAAT TGACTTCCAG ACAAGTTGAT AAACTAACTC GTCATTTTCG CCAATTGCGA 
AATCATATCC GTGAATTTGA GAGAAGCATA ATGCGTCTTT GTATCGAAAA AGCACGCATC 
CCCAGAAAAT TGTTTATAGA TACCTTCCCA GGCCAGGAAA CAGATCTAAG CTGGTTAGAA 
ACCATTATCA GCAAACATGC CAAAAAACTT GATCTTGATC GTATAGAAGA AAATCGGGAA 
GAAATACTAC GCTTACAATC CAAGCTGGCC TCTTTTGAAA TCGAATATGG TTTAACCATT 
AGTGAAATCA AAGACATTAA CCGCAAGATG TCTATTGGCG AAGCCAAAGC AAGGCGTGCT 
AAAAAAGAAA TGGTCGAGGC TAACTTGCGT CTCGTGATTT CCATCGCCAA AAAATACACC 
AACCGCGGCT TGCAGTTTCT TGATTTGATC CAGGAAGGCA ACATTGGCCT GATGAAAGCA 
GTCGATAAAT TCGAATACCG CCGTGGCTAT AAGTTTTCTA CCTATGCGAC CTGGTGGATT 
AGACAAGCGA TTACACGATC CATAGCCGAT CAGGCGCGGA CTATTCGTAT TCCAGTCCAT 
ATGATTGAAA CCATCAATAA GCTCAATCGT ATTTCTCGCC AAATTTTGCA AGAAACTGGC 
AGGGAAGCGA CACCGGAAGA ATTGGCCGAA AAAATGGAGC TAAGTGAAGA TAAAATTCGC 
AAAGTTCTAA AGATAGCCAA AGAGCCTATT TCCATGGAAA CCCCTGTCGG TGATGATGAC 
GACTCTCATC TGGGTGATTT TATTGAAGAC AACAACATTG AATCGCCAAT CGATATGGCT 
ACAGCGGAAG GTTTAAGAGA AGCCACTTTA GAAATACTGG AAACCCTGAC CCCACGAGAA 
GCCAAGGTTC TGCGTATGCG TTTTGGTATC GAAATGAATA CAGACCATAC CCTGGAAGAA 
GTTGGTAAAC AATTTGACGT AACCCGCGAA CGTATTCGCC AAATCGAAGC AAAAGCACTA 
CGCAAATTGC GCCATCCTTC ACGTTCAGAA AAGCTAAGAA GCTTCCTTGA AGGGGATGAA 
GGTTAA 

 

Protein sequence

MTMNDQDQQS SQITKVISLG KEQGYLTYSQ INDLLPNIVD TEHFDVIISM LEGMNIKVFE 
LPPSEDELAL LLNTEEVPDI EEAAMVLASV DKETGRTTDP VRMYMREMGT VELLTREGEI 
RIAKRIEEGI YQVLKSLAHY PETVQLVLED YDRFLAEEIR LNEIISGFAD VDEEIAPATN 
IGSMLDEEQQ EEILLDVDEE DEDGEGGISD VDDGPNPEQA KIYFDELREA FEKAMKALKE 
HGRTNKKTVE LLDSMSESFL KLKLTSRQVD KLTRHFRQLR NHIREFERSI MRLCIEKARI 
PRKLFIDTFP GQETDLSWLE TIISKHAKKL DLDRIEENRE EILRLQSKLA SFEIEYGLTI 
SEIKDINRKM SIGEAKARRA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA 
VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR ISRQILQETG 
REATPEELAE KMELSEDKIR KVLKIAKEPI SMETPVGDDD DSHLGDFIED NNIESPIDMA 
TAEGLREATL EILETLTPRE AKVLRMRFGI EMNTDHTLEE VGKQFDVTRE RIRQIEAKAL 
RKLRHPSRSE KLRSFLEGDE G