Gene lpp1317 details

Gene Information

• Locus tag: lpp1317
• Symbol: lspF
• ID: 3118654
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Legionella pneumophila str. Paris
• Kingdom: Bacteria
• Replicon accession: NC_006368
• Strand: -
• Start bp: 1469693
• End bp: 1470892
• Gene Length: 1200 bp
• Protein Length: 399 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637580012
• Product: type II secretory pathway protein LspF
• Protein accession: YP_123641
• Protein GI: 54297272
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1459] Type II secretory pathway, component PulF
• TIGRFAM ID: [TIGR02120] general secretion pathway protein F

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCGCCT ACCAATATCA AGCGCTAAAA GTGAATGGCA GCATTAGCAA AGGTGTAATA 
GAAGCTGATT CTGAACGTCA TGCACGTCAA TTATTGCGAG AACAAGGACT AATCCCTACT 
CAAGTCCAAA CATTAACCCA GCAACGTGCT GCCAGCAGCA AAAGTAAAGT TTCTGCGGCT 
GATTTGGCAT TACTCACGAG ACAGCTGGCA ACACTTCTGG CTGCCGGTAT TCCTGTTGAA 
GAATCATTGC GCGGGGTCAG CGAACAAACA GAAAAAGACA AAGTCAGAGA GCTTATTATC 
GGAGTTCGCT CTAAAGTATT GGAAGGGTAT GGTCTTGCTC AGGCAATGGC TCAATATCCC 
AATGCCTTTC CAGAACTATA CCGGGCAACA GTTGGCTCAG GCGAGCAGAC AGGGCGTCTT 
GATGTCGTTT TAGAAAAATT AGCTGATTAT ACTGAAAAAC AACAACAAAC TCGACAGAAA 
GTGCAGCAAG CCTTGATTTA CCCATTGCTC ATGATCATTG TTTCTACTGC CATTATCAGT 
TTTTTACTTA CTTTTGTCGT CCCTAAAATT ATTGATGTGT TTACCGAAAG TGGCCAAACA 
CTACCACCAA TGACGCAATT GCTTATTAAC TTGAGCCAAT TTATTAAATC TTATGGTTTG 
TATAGTCTAG TGACAATAAT TGTGGCTCTA ATTGGATTTA AAAAGAGCCT CAGTAATATA 
AAAATTAAAA CAGCATGGCA TCAATTCATG CTTAAACTAC CTATCGTGTC TTATTTGGTT 
AAAACAATTA ATGTCGCGCG ATATATTCAC ACGTTTGGAA TTCTATTTGC AGCGGGAGTC 
AGTGTACTTG AAACCATGCG TGTTTCTTCA AGTTTGGTAA CCAATATCGT GATGAGACAG 
GCTTTTGATT TAGCTACTCT ACGAGTCCGT GAAGGAAGTG GAATCAGTGA GGCCCTCAAA 
GAAACAAAAT TCATTAGCCC CATGGCTATC CATCTGATAG CCAGTGGTGA GAAAAGCGGT 
CAACTTTCAG AAATGATGGA ACGCTCAGCG TCTCATTTAG ATAATGAAGT AAACCGACTG 
ATTGAAACAT CCTTAACTTT ATTAGAACCT ATGGTTATTC TATTAATGGG TGCTGTTGTT 
TTATTTATTG TACTAGCGAC CTTATTACCT ATTTTTTCAA TGGAACAATT AGTTGCCTGA 

 

Protein sequence

MGAYQYQALK VNGSISKGVI EADSERHARQ LLREQGLIPT QVQTLTQQRA ASSKSKVSAA 
DLALLTRQLA TLLAAGIPVE ESLRGVSEQT EKDKVRELII GVRSKVLEGY GLAQAMAQYP 
NAFPELYRAT VGSGEQTGRL DVVLEKLADY TEKQQQTRQK VQQALIYPLL MIIVSTAIIS 
FLLTFVVPKI IDVFTESGQT LPPMTQLLIN LSQFIKSYGL YSLVTIIVAL IGFKKSLSNI 
KIKTAWHQFM LKLPIVSYLV KTINVARYIH TFGILFAAGV SVLETMRVSS SLVTNIVMRQ 
AFDLATLRVR EGSGISEALK ETKFISPMAI HLIASGEKSG QLSEMMERSA SHLDNEVNRL 
IETSLTLLEP MVILLMGAVV LFIVLATLLP IFSMEQLVA