| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMAA0399 |
|---|
| Symbol | |
|---|
| ID | 3087247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei ATCC 23344 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006349 |
|---|
| Strand | + |
|---|
| Start bp | 387061 |
|---|
| End bp | 390690 |
|---|
| Gene Length | 3630 bp |
|---|
| Protein Length | 1209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637564323 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_105195 |
|---|
| Protein GI | 53716348 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.196026 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACG CTGTCGCACG CATCGTTCGC CCGCTGCCGT CGCGGGACAT CTGGACGTTC
GCCGGCCTCG TCGTGCTGGC GTGTTTCGTT TGGCTTGCCG GGCCGCTGTT CGCGTTCGCC
GAGTTCCGCC CGTTCGAGAG CGGCGCGGTG CGCGCGGCGA CGATCGTCGC GCTGTTCGTC
GCGTGGGGCG CGCGGATCGC GTGGCGCGGC TGGCGCGCGG GGCAACTGAA CGCGCAGTTG
CTCAACCAGT TGCGCGAAGC GGCGCCGCGG CCCGCCGCGA CGGGCGATCC CGCGCAGGCG
CAGCTCGACG AGCTGCGCAG CCGCTTCGAC GAAGCCGCGA CGCTGTTGAA GAAAGTCCGT
TTCGGCGAAG CCGACGGCGC GCGCAAGGGC CTGCCGCGGT GGCTCGAGCA GATGTCGCGC
CAGTATCTGT ACCAACTGCC GTGGTACGTG TTCATCGGCG CGCCGGGCTC GGGCAAGACG
ACGGCGCTCG TCAACTCGGG GCTGAGCTTT CCGCTCGCCG AGCAGTTCGG GCGCGCGGCG
ATTCGCGGCG TCGGCGGCAC GCGGCACTGC GACTGGTGGT TCACGAACGA CGCGGTGCTG
ATCGACACCG CGGGCCGCTA CACGACGCAC GAGAGCAACC GCGCGCTCGA CGAGGCCGAA
TGGAAGGGCT TCGTCGATCT GCTGAAGAAG TACCGCGCGC GCCAGCCGCT GAACGGCGCG
ATGCTGACGA TCAGCGTCGC CGATCTGCTC GGCGCGTCGG AGGCGGAGCG CACGCAGCAC
GCGATGGTGC TGCGCAAGCG CCTGCTCGAG CTGCGCGCGC AGCTCGGCAT CCGCTTTCCG
GTGTATCTGC TCGTGACGAA GGCGGACTTG CTCGCCGGCT TCGCCGAATA CTTCGGCGGC
TTCGGCCGCG CCGAATGCGC GCAGGTGTGG GGCTTCACGT TCCCGCTCGC CGAGAGCGAA
GCGCCCGGCT TCGAGCTGCG CGCGGCGTTC GACCGCGAAT ACCGGCTGCT GCACCAGCGG
CTGAACGACG GGCTGCCGGA GCTGCTCGCA TCGCAGACCG ACGCGCGCCA GCGCGAGATG
ACCTACCTGC TGCCGCAGCA GATCGCCGAT CTGCAGGACA TGCTCGGCCA GTTCGTCGCC
GAGGTGTTCT CGGTGTCGAG CTTCGAGCCG ATGCCGATGC TGCGCGGCGT CTATCTGACG
AGCGGCACGC AGGAAGGCAC CGCGTTCGAC CGCGTGATGA GCGGGATCAA GCGCTTCCTG
AAGATCGAGG GCGTGCCGCC CGCCGCGCAG ACGGGCTCGT CGGGCCGCAG TTTCTTCCTG
AAATCGCTGC TGCAGGATCA CATCTTTCGC GAGGCGGCGC TTGCCGGCAG CAATCTGCGC
TGGCATCAGC GGCAGCGTGT GCTGCAGATC GTCGGCTACG CGGCGATCGC GCTGCTGTGC
GTGGCGGTGC TGTTCGCGTG GCTGCGCAGC TACTCGCGCA ATCGCGACTA TCTCGACGAG
GTCGCCGCGC GCGTGCCGGC GGTCGACGCG CAGATCGGCC GCGCGAAATT CACGGGCGCG
GCCGACATCG TGCAACTGCT GCCGGTGCTC GACGAGCTGA GCGGCCTGCC GAACGCGGGC
GGCGTGGACT TGCGGCATCC GCCGCTCGCG TATCGCTGGG GCCTGTTCCA GGGCGAGAAG
ATCGAGGAGG CGAGCGACGC CGTCTACCGG CGCGCGCTCG ACGACGTGCT GCTGCCGATC
GCCGCGAGCC GGATGGAGCA GGCACTGCGC GACGCGCGGC CCGACGAGGT CGAGTATGCG
TACGCGGCGC TCAAGGCGTA CCTGATGCTT TACGACAGCG CGCACTACGA TCCCGCGTTC
GTGCAGGCCG TCGTCGATCT CGAGATGGAG CGCGCGCTGC CGGCCGATTT CTCGTCCGCG
CAGCGCAGCG CGCTGCGCGC GCATCTCGGC GCGCTGTTCG GCAATCGCGT CGCGGTGTCG
CCGTTTCCGA TGAACGAGCG GCTCGTCGCC GACGTGCGCG AGCGGCTGCG GCAGGTGCCG
TTCTCGCAGC GGCTGTATCG GCAGCTCGCG CGCACGCTGC ACGCGAGCAC CGCGTCGTAC
GATTTCAGCG TCGCGCGCGC GGTGGGGCCG GACGCGTCGC TCGTGTTCCG GCGGCAGAGC
GGCAAGAGCC TCGCCGACGG CGTGCCGGGC CTCTACACGC GCAGCGGCTA CCGCAACGTG
TTCGCGCCGC GTCTGCCCGG CGCGATCGAT TCGTACGGGC GCGAGGAGGT GTGGGTGCTG
AACCTCGGCG CGTCCGAGAT CCCGAATCCG GCCGACGCGG CCGCCTGGGC GCGCGACATC
CGGCAGCTCT ACCTGAACGA CTACATCAAG ACCTGGGACG ACTATCTGGC CGACATCCGG
CTGCAGCGCA CGTCGACGCT CGCGCAGAGC ATCCAGGTCG CGCGCACGCT GTCGTCGGCC
GATTCGCCGC TCACGCGGCT GATGGTCGCG CTCGCGCGCG ACACGCCGCT CGGCGATGCG
CCCGGCGGCG CGCGCAATCT CGCGTCGCGC GCGCAGGACA AGGTCGACGA GGCGCGCAAC
TCGCTCGCGC AGATCTTCGC CGGGCAGCCG GGCGGCGAAG CGGGCGCGGC GGCCGCGCCG
CCCGCGAGCC CCGAGCAGAT CGTCGACAGC CACTTCGCGG GGCTGCGCGC GTTCGCGCCG
GGCGGCGGGG ATCAGGCGGC GTCGTTCGAC GCGGTGCTCA AGGCGATCGA CGCGCTGTAC
ACGTACCTCA CCGCGACCGA CGACGCATTG CGCAGCGGCG CGGCGCCGCC GCCGTCGGAC
GCGCCCGCGC GGCTGCGCGC GCAGGCGGGC CGGTTGCCGA CGCCTGTGCG CGAGGTGCTC
GACGATTTGT CGAACGTCGC GAACGGCAGC ATCGCGAGCG TCGAGCAGCG CAACGTCGCG
CAGCGCGCGG GCGCGAACGT CGGCGATTTC TGCCGGCAGG CGATCGCCGG GCGCTACCCG
TTCGCGCGCG GCGCGGCGCG CGACGTCGCG CCGTCCGATT TCGCGCAGCT GTTCGCGGCG
GGCGGCCTGA TGGACGACTT CTTCCAGAAG AACCTGCAAA CGCTCGTCGA CACGACCGCG
CATCCATGGC GTTTCAACAA CCGCAACGCC GAAGCCGACC CGTCGGCGGC CGCGATGCTC
GGCTCGTTCG AGAAGGCGGC GGTGATCCGC GACGTCTATT TCGGAGGCGG CGCGCGGACC
GCGCAGATCA AGGTCGAGAT CGTGCCGCTC GAAATGGACC CGTCGATCTC GGAGATGCTG
CTCGACGTCG ACGGCCAGAT CGTCCGCTAC GCGCACGGCC CGCAGGTGCC GACGGCGGTG
CAGTGGCCCG GCACGCGCGG CAGCAATCAG GTGCGGCTGC AGGTGACCGA GCAGTCGGGG
GCGACGGGCG GCTTCACGAC CGAGGGCCCG TGGGCGCTGC ACCGGCTGTT CGACCGCGCG
GGCGTGTCGG GTGGGCGCGG ACCCGAGCAG ATGGTCGCGA GATTCGCGGT CGACGGCAAG
CCGATCGTGC TGCAGGTGAC GGCGAGCAGC GTTCGCAACC CGTTCCGGTT GCCGCAGATG
GAGTCCTTTA CATGTCCTCC GAAGCAATGA
|
|---|
| Protein sequence | MSHAVARIVR PLPSRDIWTF AGLVVLACFV WLAGPLFAFA EFRPFESGAV RAATIVALFV
AWGARIAWRG WRAGQLNAQL LNQLREAAPR PAATGDPAQA QLDELRSRFD EAATLLKKVR
FGEADGARKG LPRWLEQMSR QYLYQLPWYV FIGAPGSGKT TALVNSGLSF PLAEQFGRAA
IRGVGGTRHC DWWFTNDAVL IDTAGRYTTH ESNRALDEAE WKGFVDLLKK YRARQPLNGA
MLTISVADLL GASEAERTQH AMVLRKRLLE LRAQLGIRFP VYLLVTKADL LAGFAEYFGG
FGRAECAQVW GFTFPLAESE APGFELRAAF DREYRLLHQR LNDGLPELLA SQTDARQREM
TYLLPQQIAD LQDMLGQFVA EVFSVSSFEP MPMLRGVYLT SGTQEGTAFD RVMSGIKRFL
KIEGVPPAAQ TGSSGRSFFL KSLLQDHIFR EAALAGSNLR WHQRQRVLQI VGYAAIALLC
VAVLFAWLRS YSRNRDYLDE VAARVPAVDA QIGRAKFTGA ADIVQLLPVL DELSGLPNAG
GVDLRHPPLA YRWGLFQGEK IEEASDAVYR RALDDVLLPI AASRMEQALR DARPDEVEYA
YAALKAYLML YDSAHYDPAF VQAVVDLEME RALPADFSSA QRSALRAHLG ALFGNRVAVS
PFPMNERLVA DVRERLRQVP FSQRLYRQLA RTLHASTASY DFSVARAVGP DASLVFRRQS
GKSLADGVPG LYTRSGYRNV FAPRLPGAID SYGREEVWVL NLGASEIPNP ADAAAWARDI
RQLYLNDYIK TWDDYLADIR LQRTSTLAQS IQVARTLSSA DSPLTRLMVA LARDTPLGDA
PGGARNLASR AQDKVDEARN SLAQIFAGQP GGEAGAAAAP PASPEQIVDS HFAGLRAFAP
GGGDQAASFD AVLKAIDALY TYLTATDDAL RSGAAPPPSD APARLRAQAG RLPTPVREVL
DDLSNVANGS IASVEQRNVA QRAGANVGDF CRQAIAGRYP FARGAARDVA PSDFAQLFAA
GGLMDDFFQK NLQTLVDTTA HPWRFNNRNA EADPSAAAML GSFEKAAVIR DVYFGGGART
AQIKVEIVPL EMDPSISEML LDVDGQIVRY AHGPQVPTAV QWPGTRGSNQ VRLQVTEQSG
ATGGFTTEGP WALHRLFDRA GVSGGRGPEQ MVARFAVDGK PIVLQVTASS VRNPFRLPQM
ESFTCPPKQ
|
|---|
| |