| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA2822 |
|---|
| Symbol | |
|---|
| ID | 3090657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei ATCC 23344 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006348 |
|---|
| Strand | + |
|---|
| Start bp | 2909562 |
|---|
| End bp | 2911001 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637563414 |
|---|
| Product | TolC family type I secretion outer membrane protein |
|---|
| Protein accession | YP_104336 |
|---|
| Protein GI | 53723964 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.390937 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCG CACGCACCCT CGCCATGGCC GGCGCGCTCG CGCTCTTCGC ATCGCAAGCG
GTGCACGCGC AATGGCTCGA TCTCTACGGA ACCCGAAAGA ATGTGTCGGC TTCTCCCGCC
GCGCCGATGC TGAAGAACGC GACATGCCAG CCCGAGCTCG CGGACCGTCC GATCGAGCTC
GAAGACGCGA TCCTGCAGGC GATCTGCGCG AACCCGCAGG CACGGCGCGC GTGGGCCGAT
GCGCGCGCGC AGGCCGCCCA GCTCGGCGTG AAGGAGGCGG CGTATCTGCC GACGCTCAAT
GCAACAGCGG GCATTCAGCG CAACTGGCAA ACGACGACGT ACGAGCAGGA CCTCGGCCCG
ATCACGCTCA CCGCCGACCA GAAGCAGATC CAGACGAGCC GCTACGGCGC GTTGAACCTG
AGCTGGGTGC TGTTCGATTT CGGCAAGCGC AGCGCGGCGC TCAGGCAGGC GCGCGAGCTC
CTCGCCGCCG CCAACGCGAC GCAGGACGAC ACGCTCCAGA CCCTCCTGTT CAATGCCGCC
CAGGCGTATT ACAACCTGCG CGACACGCAG GCAGCGCTTG ACGCGGCGCG CACGACCGAA
CGCGTCGCGC AGGATAGCCT CACCGCGGCG AAGGCGAAGC ACGACGCCGG CGCCGGCACG
CTGAGCGATC AACTGCAGGC GCAAACGAGC TATCGCCGCG CGGTGCTCGA TCGCGTGAGC
GCCGAAGGCG ACGTGCGGAA CGCGACGGGC GTGCTCGCCG TCGCGATGGG GCTCGACGCG
AACACGCCGC TGCGGATCGC GACCGCCGAG CCGCCGGTCG ATCGCAACGC GTTCGCCGAA
GGCATCGCGC AATTGATCGA CGAGGCGAAG CGGCAGCATC CGAAGCTCGT CGCCGCGCGC
GCGAAACTCG ACGCGGCGCG CGCGAACGTC GATGCGGTGC GTGCGCAGGG CCGCCCGACC
ATCTCGCTGA CCGGCAGCCT CAGCCGCAAC AGCCCGTCGT ATCAGCAGCA GCCGGGCATC
CAGACCACCG CGAGCCACGG CAGCATGATC GGCGTGCAGG TGACGATCCC GCTCTTCGAA
GGCTTCGCGT CCGGCTACCG CGTCGCGGCC GCGCAGGCGC AGGCGGATGC GCAGGAGGCC
GACGTGCAGA ACACCGAGCT GAACGTCTCG CTCGACGTGT GGAAGAGCTA TCAGAGCCTG
CAGACCGACA CCGCGAATCT CGACAATTCG AAGGACCTGC TCGGCGATGC GCAACGCTCG
CTCGACATCG CACGGGGCCG GTACAAGGCG GGCGTCGGCA CGTTCACGGA GTTGCTCAAT
GCGCAGACCG CGCTCGCGGA CGCGCAGAAG CAGCGCGTGC AGGCGCTGTC GAAATGGCGC
ACCGCGCGGC TCAAGCTCGC GGCGAGCCTC GGCAGCATCG GCCTGTGGTC CGCCCATTGA
|
|---|
| Protein sequence | MKPARTLAMA GALALFASQA VHAQWLDLYG TRKNVSASPA APMLKNATCQ PELADRPIEL
EDAILQAICA NPQARRAWAD ARAQAAQLGV KEAAYLPTLN ATAGIQRNWQ TTTYEQDLGP
ITLTADQKQI QTSRYGALNL SWVLFDFGKR SAALRQAREL LAAANATQDD TLQTLLFNAA
QAYYNLRDTQ AALDAARTTE RVAQDSLTAA KAKHDAGAGT LSDQLQAQTS YRRAVLDRVS
AEGDVRNATG VLAVAMGLDA NTPLRIATAE PPVDRNAFAE GIAQLIDEAK RQHPKLVAAR
AKLDAARANV DAVRAQGRPT ISLTGSLSRN SPSYQQQPGI QTTASHGSMI GVQVTIPLFE
GFASGYRVAA AQAQADAQEA DVQNTELNVS LDVWKSYQSL QTDTANLDNS KDLLGDAQRS
LDIARGRYKA GVGTFTELLN AQTALADAQK QRVQALSKWR TARLKLAASL GSIGLWSAH
|
|---|
| |