| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BT9727_2729 |
|---|
| Symbol | nupC |
|---|
| ID | 2858580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_005957 |
|---|
| Strand | + |
|---|
| Start bp | 2802074 |
|---|
| End bp | 2803267 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637514151 |
|---|
| Product | nucleoside transporter |
|---|
| Protein accession | YP_037053 |
|---|
| Protein GI | 49477924 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATTTCA TATTGAATAT GTTAGGGATT TTCGTTGTCA TATTAATTGT TTACTTATGT
TCGCCTAATA AAAAACATAT AAAATGGAGA CCAATTGTAA TTCTCATCAT ATTAGAGCTT
TTTATTACGT GGTTTATGTT AGGCACAAAG CTAGGCAGTA TTATCATTAA TAAAATTGCT
TCATTTTTCA GTTGGCTACT GGCATGTGCG AATGAAGGAA TTCGATTTGC ATTTCCTTCT
GCTATGGAAA ATCAGACAAT TGATTTCTTC TTTAGCGCAT TACTACCTAT CATTTTTGTT
ATCACGTTCT TTGATATTCT TTCTTACTTT GGAATCTTAA CTTGGATTAT TGATAAAGTA
GGTGCAGTTA TTTCAAAGAT TTCTCGTTTA CCAAAGTTAG AAAGTTTCTT TTCGATTCAA
ATGATGTTTT TAGGAAACAC TGAAGCACTT GCGGTTGTTC GTGATCAATT ATCTGTTTTA
AAAGAAAACC GTTTGCTGAC TTTTGGAATT ATGAGTATGA GTAGCGTCAG CGGTTCCATT
CTTGGTGCTT ATTTATCAAT GGTTCCAGCA ACATATATTT TCAGCGCAAT CCCATTAAAT
TGTATTAACG CATTAATTTT AGCCAATGTA TTAAATCCTG TGGAAGTTTC GAAAGAAGAA
GATGTTGTTT ACACACCTTC CAAACATGAA AAAAAGGATT TCTTTTCTAC TATTTCAAAC
AGCATGTTAG TCGGGATGAA TATGGTTATC GTTATTTTAG CTATGGTAAT TGGTTATGTA
GCTTTAACTG CATGTTTAAA TGGGATTTTA GGATTTTTTG TAACGGGGTT AACAATTCAA
AAAATCTTCT CCATTATCTT TAGTCCTTTC GCTTTTTTAC TCGGTTTATC GGGCAGTGAT
GCTATGTATG TAGCTGAATT AATGGGGATC AAAATAACGA CGAATGAATT TGTTGCAATG
ATGGATTTAA AATCAAACTT AAAGTCTTTA CAACCGCATA CGGTTGCGGT TGCCACAACA
TTTCTAGCTT CTTTTGCTAA CTTTAGTACA GTAGGTATGA TTTATGGAAC TTACAATTCA
TTATTTGGCG GCGAAAAATC ATCAGTCATC GGGAAAAATG TTTGGAAGCT TCTTGTGAGC
GGAATGGCTG TTTCCTTATT AAGCGCTATG CTTGTTGGGC TTTTTGTATG GTAA
|
|---|
| Protein sequence | MYFILNMLGI FVVILIVYLC SPNKKHIKWR PIVILIILEL FITWFMLGTK LGSIIINKIA
SFFSWLLACA NEGIRFAFPS AMENQTIDFF FSALLPIIFV ITFFDILSYF GILTWIIDKV
GAVISKISRL PKLESFFSIQ MMFLGNTEAL AVVRDQLSVL KENRLLTFGI MSMSSVSGSI
LGAYLSMVPA TYIFSAIPLN CINALILANV LNPVEVSKEE DVVYTPSKHE KKDFFSTISN
SMLVGMNMVI VILAMVIGYV ALTACLNGIL GFFVTGLTIQ KIFSIIFSPF AFLLGLSGSD
AMYVAELMGI KITTNEFVAM MDLKSNLKSL QPHTVAVATT FLASFANFST VGMIYGTYNS
LFGGEKSSVI GKNVWKLLVS GMAVSLLSAM LVGLFVW
|
|---|
| |