Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BT9727_2287 |
Symbol | rpoD |
ID | 2855811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
Kingdom | Bacteria |
Replicon accession | NC_005957 |
Strand | + |
Start bp | 2371141 |
End bp | 2371680 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 637513711 |
Product | RNA polymerase sigma-70 factor |
Protein accession | YP_036613 |
Protein GI | 49479242 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.00000136578 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAAATGG AACAGACATT TATTGAAAAG TGTAATCATG AAGAGCTGGA CGATGTTATA AAAGACTATT GGCAAGATGT ATGGAATTAT TCATTTATTA TTACGAAAGA TCCACACTTA TCAGATGATA TTACGCAAGA TGTATTTATA AAGGTATTTA AAAATTGGAA TTCATTTCGA AAGGAGTCAT CTATTAAAAC GTGGATATTA AAAATCACAA GAAATACGGC AATAAACTAT TTGAAATCAT CTTATTTTAA AAGAATATCT TTAGTAGGAT TTTTTAGTGA CGACAAGCAA ACTGTGTCGG CAGAACAAGA GTTTTTTAAG CAAGAAGAAA TGAATGATGT TTGGAAAGTT GTATTAAAAC TACCTAAAAA GCACCGTGAA ATAATAATAT TGGACGCAAA ATATGAATTA TCTTATGAAG AAATGGCTGA AACACTAGGA GTATCCATTG GAACTGTAAA ATCTAGATTA AGTAGAGCAA GAAGTAAGGT TTCAAAACTA ATAGGGGAGG GTGGTAGTGA TGAACAATAA
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Protein sequence | MEMEQTFIEK CNHEELDDVI KDYWQDVWNY SFIITKDPHL SDDITQDVFI KVFKNWNSFR KESSIKTWIL KITRNTAINY LKSSYFKRIS LVGFFSDDKQ TVSAEQEFFK QEEMNDVWKV VLKLPKKHRE IIILDAKYEL SYEEMAETLG VSIGTVKSRL SRARSKVSKL IGEGGSDEQ
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