Gene PSPTOA0068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTOA0068 
Symbol 
ID1187358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004633 
Strand
Start bp69369 
End bp71657 
Gene Length2289 bp 
Protein Length762 aa 
Translation table11 
GC content60% 
IMG OID637408401 
ProductTraG/TraD family conjugal transfer protein 
Protein accessionNP_808726 
Protein GI29171542 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCCCA ATGACTACGC CGTCGAGCGC ACGCGCCTAA ATCGGCGGGT TTACCACTCG 
GCACTGGCTG AGTGGTTGAT GGGCCCCGGT AGTCTGACGC TGGGCCTTGC CGGGTCTGTG
GTGGGAGGCG TCCTGTACCC GGTCAGCCTG TGGCTCAGTC TGCCGGCCTT GCTGGTTTGG
TCACCTGTCA TGCTGCTCGA ACCCTGGCAG ATGCCCATGC GCATGCCTTC AGACATGGAC
TGCCTCGACC CTTCGACGCA ACGCCAGGTG ACGGGCAAGC TGCTGGGTTT CTTGCCGGTC
ACGGCCATGC GCACGGTGAT GCTCAAGGCA GCGGGCATCC TGTATATGGG GTACCTGCGC
GGTCGGGACG CCGGGCGTGA ACTGTGGCTG TCGCTGGATG ACATGACCCG CCATATTCTG
ATGTTCGGTA CAACCGGTGC CGGCAAAACC GAAGCACTGC TGGGGTACGT GTTGGGCCAG
CTGGGCTATG GAAAGGGCCT GATTTATTCG GACGGCAAGG CCCAAAATGA TGTGGCCGCC
GCGATCGTGT CGCTGGCCCG ACGCTTTGGC CGTGAAGACG ACGTTCGGAT GATGAACTTC
ATTACCGGGG GCCGCTCCAG GGCACAGGAA CTGCTGGAGG ACAACAAAAG CAGAGGGCAG
ACCAATACCG TCAACGCGTT CGGTATTGCT CAGGAAACCT ACATCATCAA CCTGATGGAT
TCGATGTTGC CTCCTGCGGG CAACGATGCC GGCTGGCAAG AGAAAGCCCG GGCCATGATT
CAGGCTTTGG TGTTCTCCCT GGTGTACAAG TGCCGGCGTG AAGGCACGGT CATGTCCCAG
CGCACGATCC AGGCACATTT GCCGTTGCGG GCCATTGCCA AGCTCTACAT CCAGTCGGTG
GAACAGCAAT GGCATGAAGA CGCCCAGTTA CCCCTGAAAA ACTACCTGGG CACATTGTCC
GGTTTTGACC TGGCCAAGGT GGATTCGCCG GAGGAATGGG CGACCACTGC GTTGGATCAG
CATGGTTTTC TGATCCAGCA ATTCACCCGC ATGCTGGCCT TGTTCAATGA CACCTACGGC
CATGTGTTTG CTCGTGACGC CGGCGACATA GACCTCAAGG ACGTGGTGCA TAACGATCGC
ATCCTGGTGG TCCTGATTCC TGCGCTGGAA ATCTCCTCGA CCGAGGCCGC GACTCTTGGG
CGTCTGTACG TGTCGCAGCT GGCCATGATC CTGAGCCAGG ATCTGGGGGA GAAACTGGAG
GGCAAACCCG AAGACATCCT GGTGATCCGC AAGTACAAGG ACCGCTTTCC GTTCTTGTGG
ATCTGCGACG AGGTCGGGGC CTACTACACC GAAAAGCTCG GTGAGCTGGC CACGCAGGTA
CGCTCCCTGG GGTTTTGCCT GCTCCTGGCC AGCCAAGAGG CGCAGCGCCT CAAGTCGGCG
GCCGGCGACA AGGTGTGGAC GCTGATCGGG AACATGGGGG TCCGAATCAC CGGCAAGATC
ATGGACCCCA AGGACACTCT CGAAATACTG CAGTTGATGG CCGGTACCGA GTACCTGCCA
GTGATGAGCG GTATGGTGCG TCAGGCCGGA ATCATGGGGG CCAGCTGGGA GGAAGCAGAC
ACACTGAGCC TGAAAGATGA GAAGAAAGTC AGCGTCGAGG AAGTGCAGCA GCTCAAGGAG
GGGGAAAACA TCACGCTGTT CAACGGACAA GTGATTCGCG GCAGCTCCTT GTACATTCAC
GATGCTGACA AGCTGTCCAA GGAAGCGATC CGGATCAACC GCTTCATCGA GGTGGCCCCG
CCAGCGCTGG ACACCTTGTT GGCCGGTGCG CCTGCTCACA TTCGGCGCAG CTATTCGCGC
GCGGACCGCG TGCAGCAGAT TCTGTACCAC CTGGCGATGA AGCCTGGTCG TTCAGACCTT
GAAAACCTGG TGCTGACAGA TCCGACGTTG GTCGTCTTGA ACGAGCTGGG AGAAGAGTGG
CGGCTGATCT GGCGTCGCCG TCCTGGAGCG GCAGTGCGCA GCACCTTGTT ATGGCACACA
GCGCTGGAGC ATGTGCCCAA GCGCGGAAGC GGCTACGTGG CGCAATCGTC CACGGCGCTG
GACCTGACCG TCGGCAGCAA GCGGTTGCAG ACCTATCAGG CGCAGCACAT CGATCCGGCC
AGAGTACCGA AAGTGAAGGG CAAGGCGCCT GCACCTAGAG CCACAACGCC TGTTCCACCA
AGCCACGACC AGTCACCGCC CTATTTCGAC GACGGATCGT ATTCGCCGGC GCCGTTCGAC
TGGGATTAA
 
Protein sequence
MRPNDYAVER TRLNRRVYHS ALAEWLMGPG SLTLGLAGSV VGGVLYPVSL WLSLPALLVW 
SPVMLLEPWQ MPMRMPSDMD CLDPSTQRQV TGKLLGFLPV TAMRTVMLKA AGILYMGYLR
GRDAGRELWL SLDDMTRHIL MFGTTGAGKT EALLGYVLGQ LGYGKGLIYS DGKAQNDVAA
AIVSLARRFG REDDVRMMNF ITGGRSRAQE LLEDNKSRGQ TNTVNAFGIA QETYIINLMD
SMLPPAGNDA GWQEKARAMI QALVFSLVYK CRREGTVMSQ RTIQAHLPLR AIAKLYIQSV
EQQWHEDAQL PLKNYLGTLS GFDLAKVDSP EEWATTALDQ HGFLIQQFTR MLALFNDTYG
HVFARDAGDI DLKDVVHNDR ILVVLIPALE ISSTEAATLG RLYVSQLAMI LSQDLGEKLE
GKPEDILVIR KYKDRFPFLW ICDEVGAYYT EKLGELATQV RSLGFCLLLA SQEAQRLKSA
AGDKVWTLIG NMGVRITGKI MDPKDTLEIL QLMAGTEYLP VMSGMVRQAG IMGASWEEAD
TLSLKDEKKV SVEEVQQLKE GENITLFNGQ VIRGSSLYIH DADKLSKEAI RINRFIEVAP
PALDTLLAGA PAHIRRSYSR ADRVQQILYH LAMKPGRSDL ENLVLTDPTL VVLNELGEEW
RLIWRRRPGA AVRSTLLWHT ALEHVPKRGS GYVAQSSTAL DLTVGSKRLQ TYQAQHIDPA
RVPKVKGKAP APRATTPVPP SHDQSPPYFD DGSYSPAPFD WD