Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTOA0045 |
Symbol | |
ID | 1187335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004633 |
Strand | + |
Start bp | 44550 |
End bp | 45731 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637408378 |
Product | type IV pilus biogenesis protein |
Protein accession | NP_808703 |
Protein GI | 29171519 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR02525] plasmid transfer ATPase TraJ |
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Plasmid Coverage information |
Num covering plasmid clones | 57 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCAGA CGGCCCAGAC AATGGAGTTT GCCCCCTACG CTTTTGAAGA CGGGCTGAAT GCAGACACCT TGCGCGATTT TTTCGTCTGG TGTGAACGGC AGTCAGCCAG CGACATTCAC ATCCAGGGCG GTAACCACCT GGTGGTAGGG CATCAAGGTC GCTTGCGCCA GGCCAGCCGG TTTGTGCTGG CTGACGATAC GTGGTCCAAG CTCCTCGATG ATCTGTTCAG CCCTGAAATC CGGCCGACGG TACGCGGTGG TCGGCCTGTA GACCGGGCCA TACAGCTGGA TGGCGACATC AACCAGCGCT ACGGCCTGGA GCGTGGCGAG CGATTACGCT TTCGCTGCAA CTTTGTGCAG GCCACTGCTG GGCGACTGGA CACCACCATC GCACTGACGA TGCGGATCAT TCCATCTGAT ATCCCGGATC TAACAAAGAT GGGGCTGGAA GAGGATCTGT TCGAAGCGTT GTTGCCGTCC AATGGTCTAG GACTCATTGG TGGAATCACG GGGTCGGGTA AAAGTACCCA GGCGGCCGCT ATCTACCGCT TTTGCCTGGA CACCGATCCT GACCGCAAGG TGACCACGAT CGAAGACCCG ATCGAATTCA TTCTCGCGCG TCCAGGGGAT GTATTGGCCT CGACGCAACT GCAGATAGGT CGAGACGTTG CCAACTATGC CGAAGGCATT CGGGCAGATC TTCGCCGGGC ACCGTCGATC ATCGGGGTGG GTGAAATGCG GGATTTGGAA ACCTTCCAGG CGGCCGTTTT GGCCGGACAG GTGGGCCATT TCAATCTCAG CACCTTGCAC ATCCATTCGC CTGGAGAGGC CATTCCACGG TGCCTGACCA TGGTGCCCTC GGAAATGCGC GAGGCTACGG CCCACGATCT ACTGAGCGTT CTGCAATACA TCATCGTGCA AAAGCTGCTG CGCACCACCG ATGGCAAGCG CCAGGCCGTG CGCGAATACA TCATCTTCGA TGATGGGCTG CGCGCCAAGC TGGCCAGCAT GCCTTATCCC GAATGGGGTC GGCATATCGA CTCCATTATT CGCCTGGAGC AACGACGCTT CGCTGATCAG GCCTGGCGTC TTCATCTGGA AGGGCGCATT GACCGGCGTG AACTGGCGGT GGCCATGACC GCCTCTCAAT TGCGGGAACT CGAACAGCGG GCAAAGCCAT GA
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Protein sequence | MTQTAQTMEF APYAFEDGLN ADTLRDFFVW CERQSASDIH IQGGNHLVVG HQGRLRQASR FVLADDTWSK LLDDLFSPEI RPTVRGGRPV DRAIQLDGDI NQRYGLERGE RLRFRCNFVQ ATAGRLDTTI ALTMRIIPSD IPDLTKMGLE EDLFEALLPS NGLGLIGGIT GSGKSTQAAA IYRFCLDTDP DRKVTTIEDP IEFILARPGD VLASTQLQIG RDVANYAEGI RADLRRAPSI IGVGEMRDLE TFQAAVLAGQ VGHFNLSTLH IHSPGEAIPR CLTMVPSEMR EATAHDLLSV LQYIIVQKLL RTTDGKRQAV REYIIFDDGL RAKLASMPYP EWGRHIDSII RLEQRRFADQ AWRLHLEGRI DRRELAVAMT ASQLRELEQR AKP
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