| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTOA0042 |
|---|
| Symbol | pilT |
|---|
| ID | 1187332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004633 |
|---|
| Strand | + |
|---|
| Start bp | 42755 |
|---|
| End bp | 43246 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637408375 |
|---|
| Product | pilT protein |
|---|
| Protein accession | NP_808700 |
|---|
| Protein GI | 29171516 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 63 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTGCC TATGGCTGGT TTTGGCATTG TCGGCGCCGA TGCAGGCCTC TGCTTTCTGC
TTCCAGGAGG CTGGCCAGCG CTATGGAGTT GATCCGGTGC TACTGCAAGC GATCGGCATA
CAGGAAAGTA AACTGCAGCC TGGTGCAGTG AACCTTAACC GCGATTCGTC TGGAAAAGTG
CTCAGCACCG ACTACGGCGT CATGCAGATC AGCACGCGCA ACGCTAACCG GCTGGTCAGG
ATGGGACTGA TCACGCGAGC GGAGGACCTG CTCACCAACG CCTGCTTTAA CGTTCAGGCG
GGGGCTTGGG TACTGGCTCA ACATCTTCGT GTGTGCGGCA ATACCTGGCG TTGCCTAGGT
TCGTATAACG CAGGCTTTGA CCCTTCGCAA CGCCAGGAGC AACGGCGCCT GCATTACGCG
CAGCAAGTGC GCAACGTCTA CGACCGCCTC AAAGCATTGG GCGCTGCACC GGCCCACCTC
GCTATCCGTT AA
|
|---|
| Protein sequence | MRCLWLVLAL SAPMQASAFC FQEAGQRYGV DPVLLQAIGI QESKLQPGAV NLNRDSSGKV
LSTDYGVMQI STRNANRLVR MGLITRAEDL LTNACFNVQA GAWVLAQHLR VCGNTWRCLG
SYNAGFDPSQ RQEQRRLHYA QQVRNVYDRL KALGAAPAHL AIR
|
|---|
| |